Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABIS04_RS01910 Genome accession   NZ_CP157213
Coordinates   434730..436253 (-) Length   507 a.a.
NCBI ID   WP_350432417.1    Uniprot ID   -
Organism   Shewanella sp. H8     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 429730..441253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABIS04_RS01900 (ABIS04_01900) - 432838..433749 (-) 912 WP_350432415.1 acyltransferase -
  ABIS04_RS01905 (ABIS04_01905) - 433755..434651 (-) 897 WP_350432416.1 acyltransferase -
  ABIS04_RS01910 (ABIS04_01910) comM 434730..436253 (-) 1524 WP_350432417.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABIS04_RS01915 (ABIS04_01915) - 436620..437927 (+) 1308 WP_137223456.1 hemolysin family protein -
  ABIS04_RS01920 (ABIS04_01920) ilvY 437960..438832 (-) 873 WP_137223454.1 HTH-type transcriptional activator IlvY -
  ABIS04_RS01925 (ABIS04_01925) ilvC 439031..440512 (+) 1482 WP_350432418.1 ketol-acid reductoisomerase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55511.69 Da        Isoelectric Point: 8.0186

>NTDB_id=1004688 ABIS04_RS01910 WP_350432417.1 434730..436253(-) (comM) [Shewanella sp. H8]
MAIACVFTRASCGVEAPRVTVEVHLSNGLPAFNLVGLPETSVKEAKERVRSALINAGFEFPQKRITVNLAPADLPKQGGR
YDLPIAVGILAASNQVPAKALHQCEFVGELALSGQIRPCSGLLPAIIAARNDQHHFFMPIENRHEAELVGYHHSYFVAHL
QNLAAFLHGQAQLPLLDTLPEWIEEEPRNHSSLCMSDVIGQYQAKQGLEIAAAGGHNMLFVGPPGTGKSMLANRIIPLLP
KLTYDEAIEVAAIHSVAGLHVKPQNFLNRPFRSPHHTSSSIALIGGGSHPKPGEISLAHRGILFLDEIAEFPRKVLDCLR
EPLETGQVEISRAAAKLTFLSRFQLIAAMNPSPCGDTERARSTPDQIQRYLSRLSGPFLDRFDLTVDVPKLPAGTLTQQH
QPGETSIEIAKRVKQARDQQLSRSGVLNSELSPKQLKQDGAITQPDLEFLEQSVVSLGLSVRSFHRIQRVSRTIADLQQS
PTIERGHIAQALGYRAMDRLLAKLNQQ

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=1004688 ABIS04_RS01910 WP_350432417.1 434730..436253(-) (comM) [Shewanella sp. H8]
ATGGCGATAGCCTGTGTATTTACTCGAGCAAGCTGCGGTGTAGAAGCGCCAAGAGTTACTGTTGAAGTGCATTTAAGCAA
CGGTTTACCCGCATTTAATCTAGTGGGACTGCCAGAAACCTCTGTCAAAGAAGCTAAAGAACGCGTTAGAAGTGCGTTAA
TTAATGCTGGCTTTGAATTCCCACAAAAACGCATTACCGTCAATTTAGCCCCAGCAGATTTACCCAAGCAAGGCGGACGA
TATGATTTACCTATCGCAGTAGGTATTCTCGCAGCATCAAATCAAGTTCCAGCTAAAGCATTACATCAATGTGAGTTTGT
CGGTGAACTGGCACTCTCCGGCCAAATACGCCCTTGCAGTGGATTATTACCAGCCATTATTGCGGCACGTAATGATCAAC
ACCATTTTTTTATGCCCATCGAAAACCGCCATGAAGCTGAGCTGGTTGGCTATCATCACAGTTATTTTGTCGCCCACTTG
CAGAACTTAGCGGCTTTTCTACACGGCCAAGCACAATTACCTCTGCTTGATACCTTACCTGAATGGATAGAAGAAGAGCC
CCGAAACCATTCATCGCTTTGTATGAGCGATGTCATCGGCCAGTATCAAGCCAAGCAAGGACTTGAAATTGCGGCGGCCG
GAGGACACAACATGCTGTTCGTAGGACCACCAGGAACGGGGAAAAGCATGCTAGCCAATAGAATCATTCCACTATTACCA
AAACTCACTTACGATGAAGCCATTGAAGTAGCAGCTATTCATTCTGTCGCTGGATTACATGTAAAACCGCAAAATTTTCT
TAATCGCCCTTTTCGCTCGCCACATCATACATCATCATCTATTGCACTGATTGGTGGTGGAAGTCATCCAAAGCCAGGTG
AGATATCATTAGCGCACCGTGGGATATTATTTCTTGATGAAATAGCTGAGTTTCCGCGTAAAGTATTGGATTGTCTGCGT
GAACCTTTAGAAACCGGCCAAGTTGAGATTTCACGTGCTGCAGCAAAATTGACTTTTTTGAGTCGATTTCAACTTATTGC
CGCAATGAACCCAAGCCCTTGTGGCGATACAGAGCGCGCGCGTTCAACTCCTGATCAAATTCAACGTTATTTATCCCGTT
TATCAGGGCCATTTTTAGACCGCTTTGATTTAACCGTGGATGTACCCAAACTTCCTGCTGGCACCTTAACCCAACAGCAT
CAACCCGGTGAGACCAGTATTGAAATAGCCAAGCGGGTCAAACAAGCACGCGATCAACAACTCAGCCGATCTGGAGTGTT
AAATAGTGAATTATCCCCAAAACAACTCAAACAAGATGGTGCTATTACTCAACCCGATCTTGAATTTTTAGAGCAAAGCG
TTGTGAGTTTAGGCTTGTCTGTACGCAGTTTTCACCGCATTCAACGGGTATCACGCACCATTGCCGACTTGCAGCAATCG
CCTACCATCGAACGAGGTCACATTGCTCAAGCCCTTGGTTATCGGGCAATGGATCGATTACTGGCAAAACTGAATCAGCA
ATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(195-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55.294

100

0.556
  comM Vibrio campbellii strain DS40M4

55.01

100

0.552
  comM Vibrio cholerae strain A1552

54.028

100

0.542
  comM Glaesserella parasuis strain SC1401

54.241

100

0.542
  comM Legionella pneumophila str. Paris

46.4

98.619

0.458
  comM Legionella pneumophila strain ERS1305867

46.4

98.619

0.458
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.137

100

0.434

Multiple sequence alignment