Detailed information
Bioinformatically predicted
Overview
| Name | comE1/comEA | Type | Machinery gene |
| Locus tag | ABI424_RS04620 | Genome accession | NZ_CP157211 |
| Coordinates | 1004182..1004517 (+) | Length | 111 a.a. |
| NCBI ID | WP_012341067.1 | Uniprot ID | A0A9Q7E5D2 |
| Organism | Histophilus somni strain 23-038383_S91 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 999182..1009517
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABI424_RS04595 (ABI424_000921) | - | 1000515..1000994 (-) | 480 | WP_011608283.1 | Dps family protein | - |
| ABI424_RS04600 (ABI424_000922) | - | 1001147..1001716 (-) | 570 | WP_012341071.1 | anthranilate synthase component II | - |
| ABI424_RS04605 (ABI424_000923) | - | 1001773..1002780 (+) | 1008 | WP_012341070.1 | aminodeoxychorismate synthase component I | - |
| ABI424_RS04610 (ABI424_000924) | - | 1002929..1003510 (+) | 582 | WP_012341069.1 | aminotransferase class IV family protein | - |
| ABI424_RS04615 (ABI424_000925) | - | 1003571..1003960 (+) | 390 | WP_012341068.1 | RidA family protein | - |
| ABI424_RS04620 (ABI424_000926) | comE1/comEA | 1004182..1004517 (+) | 336 | WP_012341067.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| ABI424_RS04625 (ABI424_000927) | rdgB | 1004707..1005303 (+) | 597 | WP_012341066.1 | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | - |
| ABI424_RS04630 (ABI424_000928) | hemW | 1005303..1006481 (+) | 1179 | WP_012341064.1 | radical SAM family heme chaperone HemW | - |
| ABI424_RS04635 (ABI424_000929) | rpiA | 1006577..1007236 (+) | 660 | WP_012341063.1 | ribose-5-phosphate isomerase RpiA | - |
| ABI424_RS04640 (ABI424_000930) | serA | 1007262..1008494 (+) | 1233 | WP_012341062.1 | phosphoglycerate dehydrogenase | - |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12138.14 Da Isoelectric Point: 10.2041
>NTDB_id=1004679 ABI424_RS04620 WP_012341067.1 1004182..1004517(+) (comE1/comEA) [Histophilus somni strain 23-038383_S91]
MKKITSFFKSLLMLSVALGAFNAFAETPTQPPSSAQATQQVEPVIISDKLNINTATAEEIKHALIGIGSKKAEAIVQYRE
KFGKFTAAEQLLEVKGIGKATLEKNRDRIIF
MKKITSFFKSLLMLSVALGAFNAFAETPTQPPSSAQATQQVEPVIISDKLNINTATAEEIKHALIGIGSKKAEAIVQYRE
KFGKFTAAEQLLEVKGIGKATLEKNRDRIIF
Nucleotide
Download Length: 336 bp
>NTDB_id=1004679 ABI424_RS04620 WP_012341067.1 1004182..1004517(+) (comE1/comEA) [Histophilus somni strain 23-038383_S91]
ATGAAAAAAATAACCTCATTTTTCAAATCATTATTGATGTTAAGTGTTGCTTTGGGTGCTTTTAATGCATTTGCAGAAAC
ACCAACTCAACCACCTAGTTCAGCCCAAGCAACACAACAAGTTGAACCGGTCATTATTAGCGATAAATTGAACATCAATA
CTGCAACAGCGGAAGAAATTAAACACGCTTTAATAGGAATTGGAAGCAAAAAAGCCGAGGCAATTGTTCAATATCGTGAA
AAATTTGGTAAATTTACCGCGGCTGAACAGTTACTTGAAGTCAAGGGGATTGGCAAAGCAACACTAGAAAAAAATAGAGA
TCGCATCATTTTCTAG
ATGAAAAAAATAACCTCATTTTTCAAATCATTATTGATGTTAAGTGTTGCTTTGGGTGCTTTTAATGCATTTGCAGAAAC
ACCAACTCAACCACCTAGTTCAGCCCAAGCAACACAACAAGTTGAACCGGTCATTATTAGCGATAAATTGAACATCAATA
CTGCAACAGCGGAAGAAATTAAACACGCTTTAATAGGAATTGGAAGCAAAAAAGCCGAGGCAATTGTTCAATATCGTGAA
AAATTTGGTAAATTTACCGCGGCTGAACAGTTACTTGAAGTCAAGGGGATTGGCAAAGCAACACTAGAAAAAAATAGAGA
TCGCATCATTTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE1/comEA | Haemophilus influenzae Rd KW20 |
60.36 |
100 |
0.604 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
53.333 |
100 |
0.577 |
| comEA | Vibrio cholerae C6706 |
44.954 |
98.198 |
0.441 |
| comEA | Vibrio cholerae strain A1552 |
44.954 |
98.198 |
0.441 |
| comEA | Vibrio campbellii strain DS40M4 |
43.269 |
93.694 |
0.405 |