Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   FGK81_RS02640 Genome accession   NZ_LR590466
Coordinates   537833..538498 (+) Length   221 a.a.
NCBI ID   WP_002983685.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC8193     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 532833..543498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK81_RS02615 (NCTC8193_00516) - 532984..534384 (+) 1401 WP_011888672.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  FGK81_RS02620 (NCTC8193_00517) - 534384..534761 (+) 378 WP_002991882.1 S1 RNA-binding domain-containing protein -
  FGK81_RS02625 (NCTC8193_00518) cysK 534779..535720 (-) 942 WP_011888673.1 cysteine synthase A -
  FGK81_RS02630 (NCTC8193_00519) - 535848..536480 (-) 633 WP_009880468.1 YigZ family protein -
  FGK81_RS02635 (NCTC8193_00520) comFA/cflA 536536..537861 (+) 1326 WP_011184811.1 DEAD/DEAH box helicase Machinery gene
  FGK81_RS02640 (NCTC8193_00521) comFC/cflB 537833..538498 (+) 666 WP_002983685.1 ComF family protein Machinery gene
  FGK81_RS02645 (NCTC8193_00522) hpf 538578..539126 (+) 549 WP_002988974.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25163.41 Da        Isoelectric Point: 9.4626

>NTDB_id=1004629 FGK81_RS02640 WP_002983685.1 537833..538498(+) (comFC/cflB) [Streptococcus pyogenes strain NCTC8193]
MICLLCQQISQTPISITEIIFLRRISSPICQQCQKSFQKIGKSVCATCCANSDIIACRDCLKWENKGYNVNHRSLYCYNA
AMKAYFSQYKFQGDYLLRKVFAVELADVITKYYKGYIPVPVPVSPGCFRERQFNQVSAILEAANVSYLSLFEKLDNTHQS
SRTKKERLLVEKSYRLLKVSNIPDKILIVDDIYTTGSTIIALRKQLAKVANSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1004629 FGK81_RS02640 WP_002983685.1 537833..538498(+) (comFC/cflB) [Streptococcus pyogenes strain NCTC8193]
ATGATCTGTCTACTATGTCAACAAATTAGTCAAACACCAATAAGTATTACAGAAATCATCTTTTTAAGGCGTATCTCTTC
ACCGATTTGTCAACAATGTCAAAAAAGCTTTCAAAAGATAGGAAAAAGTGTTTGTGCGACATGTTGTGCAAACTCAGATA
TAATAGCTTGTCGAGATTGTCTAAAATGGGAAAACAAAGGATACAATGTAAATCATAGAAGCTTATATTGTTATAATGCT
GCTATGAAAGCATACTTCAGTCAATATAAGTTTCAAGGAGACTATTTATTAAGGAAAGTTTTTGCAGTAGAACTTGCCGA
TGTTATTACCAAGTACTATAAAGGCTATATTCCAGTCCCGGTTCCTGTAAGTCCCGGTTGTTTTCGAGAAAGACAATTTA
ATCAAGTGAGTGCTATTCTTGAGGCAGCTAATGTTAGCTACCTTTCTCTTTTTGAAAAGCTAGATAATACTCACCAATCT
TCCAGAACAAAAAAAGAGAGATTATTAGTAGAAAAATCTTATCGACTACTGAAAGTATCAAACATTCCTGATAAAATCCT
TATAGTAGATGATATTTATACTACTGGTAGTACAATTATCGCTCTTAGAAAACAATTGGCTAAAGTAGCAAATAGTGACA
TTAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae Rx1

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae D39

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae R6

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae TIGR4

41.629

100

0.416
  comFC/cflB Streptococcus mitis SK321

41.629

100

0.416
  comFC/cflB Streptococcus mitis NCTC 12261

41.176

100

0.412