Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   FGK83_RS03775 Genome accession   NZ_LR590465
Coordinates   750760..751767 (-) Length   335 a.a.
NCBI ID   WP_112082348.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC8468     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 745760..756767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK83_RS03745 (NCTC8468_00740) ruvX 745901..746320 (+) 420 WP_050847314.1 Holliday junction resolvase RuvX -
  FGK83_RS03750 (NCTC8468_00741) rdgC 746370..747278 (-) 909 WP_138171695.1 recombination-associated protein RdgC -
  FGK83_RS03755 (NCTC8468_00742) proC 747344..748159 (+) 816 WP_138171697.1 pyrroline-5-carboxylate reductase -
  FGK83_RS03760 (NCTC8468_00743) - 748159..749325 (+) 1167 WP_005660002.1 3-phenylpropionate MFS transporter -
  FGK83_RS03765 (NCTC8468_00744) xerD 749355..750248 (+) 894 WP_105897889.1 site-specific tyrosine recombinase XerD -
  FGK83_RS03770 (NCTC8468_00745) - 750421..750708 (+) 288 WP_138171699.1 DUF5339 domain-containing protein -
  FGK83_RS03775 (NCTC8468_00746) ruvB 750760..751767 (-) 1008 WP_112082348.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  FGK83_RS03780 (NCTC8468_00747) ruvA 751775..752389 (-) 615 WP_138171700.1 Holliday junction branch migration protein RuvA Machinery gene
  FGK83_RS03785 (NCTC8468_00748) ruvC 752452..753024 (-) 573 WP_050838878.1 crossover junction endodeoxyribonuclease RuvC -
  FGK83_RS03790 (NCTC8468_00749) - 753071..753811 (-) 741 WP_005662961.1 YebC/PmpR family DNA-binding transcriptional regulator -
  FGK83_RS03795 (NCTC8468_00750) nudB 753971..754447 (-) 477 WP_021035689.1 dihydroneopterin triphosphate diphosphatase -
  FGK83_RS03800 (NCTC8468_00751) aspS 754469..756235 (-) 1767 WP_138171702.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37005.38 Da        Isoelectric Point: 4.8587

>NTDB_id=1004574 FGK83_RS03775 WP_112082348.1 750760..751767(-) (ruvB) [Haemophilus influenzae strain NCTC8468]
MIEADRIISGQAKVDEEVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVARSAGCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGG
VISVDVAKQALSMLDVDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSKTYRHFGLQKLSD

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=1004574 FGK83_RS03775 WP_112082348.1 750760..751767(-) (ruvB) [Haemophilus influenzae strain NCTC8468]
ATGATTGAAGCAGATAGAATTATTAGCGGCCAAGCTAAGGTTGATGAAGAGGTTATCGACCGTGCTATTCGCCCTAAACT
ATTAGCAGATTATGTTGGGCAGCCGCAAGTACGCGAGCAAATGGATATTTTCATCAAGGCAGCCAAACTCCGTCAAGATG
CCTTAGATCATTTATTGATTTTTGGCCCTCCCGGTTTGGGAAAAACAACCCTTGCTAATATTGTGGCAAATGAAATGGGC
GTCAATATTCGTACGACATCAGGACCTGTATTAGAAAAAGCAGGAGATTTGGCTGCAATGCTTACTAATCTTGAACCGCA
TGATGTGTTATTTATCGATGAAATTCATCGACTTTCCCCTGCTATTGAAGAAGTCCTTTATCCAGCAATGGAAGACTATC
AATTAGATATTATGATTGGCGAAGGGCCAGCTGCTCGTTCTATTAAATTAGATTTGCCACCTTTTACTTTGGTTGGTGCG
ACCACTAGAGCGGGTTCTTTGACTTCGCCATTACGTGATCGTTTTGGTATTGTACAACGTTTGGAGTTTTATTCTGTAGA
AGATTTAACCTCTATCGTGGCACGAAGTGCTGGCTGTTTAAATCTTGAATTAGAACAGCAGGCCGCTTTCGAGGTAGCTC
GTCGTTCACGAGGCACACCTCGAATTGCAAACCGTTTATTACGACGCGTGCGTGATTATGCAGATGTACGCAATGGGGGA
GTAATTTCGGTAGATGTGGCAAAACAAGCACTTTCAATGTTGGATGTAGACGATGCTGGATTTGATTATTTAGATAGAAA
ATTGTTGTCTGCAGTTATTGAGCGTTTTGATGGCGGGCCTGTGGGGCTAGATAATCTTGCCGCTGCAATTGGCGAAGAAC
GTGATACCATTGAAGATGTTTTAGAGCCTTATTTGATTCAACAGGGTTTTTTACAAAGAACGCCACGTGGACGTATTGCA
ACATCGAAAACTTATCGCCATTTCGGTCTGCAGAAATTATCAGACTAG

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)

RuvB AAA lid domain (AAA_lid_4)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

62.385

97.612

0.609
  ruvB Streptococcus pneumoniae TIGR4

58.589

97.313

0.57
  ruvB Streptococcus pneumoniae R6

58.589

97.313

0.57
  ruvB Streptococcus pneumoniae D39

58.589

97.313

0.57
  ruvB Helicobacter pylori 26695

53.727

96.119

0.516
  ruvB Synechocystis sp. PCC 6803

55.34

92.239

0.51

Multiple sequence alignment