Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   FGK83_RS03780 Genome accession   NZ_LR590465
Coordinates   751775..752389 (-) Length   204 a.a.
NCBI ID   WP_138171700.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC8468     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 746775..757389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK83_RS03755 (NCTC8468_00742) proC 747344..748159 (+) 816 WP_138171697.1 pyrroline-5-carboxylate reductase -
  FGK83_RS03760 (NCTC8468_00743) - 748159..749325 (+) 1167 WP_005660002.1 3-phenylpropionate MFS transporter -
  FGK83_RS03765 (NCTC8468_00744) xerD 749355..750248 (+) 894 WP_105897889.1 site-specific tyrosine recombinase XerD -
  FGK83_RS03770 (NCTC8468_00745) - 750421..750708 (+) 288 WP_138171699.1 DUF5339 domain-containing protein -
  FGK83_RS03775 (NCTC8468_00746) ruvB 750760..751767 (-) 1008 WP_112082348.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  FGK83_RS03780 (NCTC8468_00747) ruvA 751775..752389 (-) 615 WP_138171700.1 Holliday junction branch migration protein RuvA Machinery gene
  FGK83_RS03785 (NCTC8468_00748) ruvC 752452..753024 (-) 573 WP_050838878.1 crossover junction endodeoxyribonuclease RuvC -
  FGK83_RS03790 (NCTC8468_00749) - 753071..753811 (-) 741 WP_005662961.1 YebC/PmpR family DNA-binding transcriptional regulator -
  FGK83_RS03795 (NCTC8468_00750) nudB 753971..754447 (-) 477 WP_021035689.1 dihydroneopterin triphosphate diphosphatase -
  FGK83_RS03800 (NCTC8468_00751) aspS 754469..756235 (-) 1767 WP_138171702.1 aspartate--tRNA ligase -
  FGK83_RS03805 (NCTC8468_00752) - 756454..756972 (+) 519 WP_114893232.1 isoprenylcysteine carboxyl methyltransferase family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22548.28 Da        Isoelectric Point: 6.2711

>NTDB_id=1004575 FGK83_RS03780 WP_138171700.1 751775..752389(-) (ruvA) [Haemophilus influenzae strain NCTC8468]
MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHFVVREDAHLLFGFAQKTDRTLFRELIKTNG
VGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKTAERLLVELKGKFKGVKQSDFFVESTHIPSVPSIEPSVENS
SDEAISALIALGYKPAEAEKLVKRVAKPELTSEQVIREALKAAL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=1004575 FGK83_RS03780 WP_138171700.1 751775..752389(-) (ruvA) [Haemophilus influenzae strain NCTC8468]
ATGATCGGTCGCTTACAAGGCATTCTTTTAGAAAAACAACCTCCAGAAATTTTACTTAATGTGCAAGGCGTAGGCTATGA
ATTGCTTTTGCCTATGACGAGTTTCTATGATTTACCAGAAATTGGTCAAGAAACGACTTTATTCACCCATTTTGTTGTTC
GGGAAGATGCTCACTTACTCTTTGGATTTGCCCAAAAAACAGACCGCACTTTATTTCGTGAATTAATTAAAACAAATGGG
GTGGGGCCTAAATTAGCCTTAGCGATTTTATCCGCCATGTCGGTCGAACAATTTGCCTATGCGATAGAGAGAGAAGAACT
TTCTAAACTCACTAAAATCCCAGGGGTTGGCAAAAAAACTGCTGAACGTTTGTTAGTTGAACTTAAAGGTAAATTTAAAG
GTGTAAAACAAAGTGATTTCTTTGTAGAAAGTACTCATATTCCGTCAGTTCCATCTATTGAACCGAGTGTAGAAAATTCA
TCTGATGAAGCTATTTCAGCCTTGATTGCTTTAGGTTATAAACCTGCAGAAGCAGAAAAATTGGTAAAACGCGTAGCTAA
ACCTGAATTAACCAGTGAACAAGTTATTCGTGAAGCTTTAAAAGCCGCATTGTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-62)

RuvA, C-terminal domain (RuvA_C)

(161-202)

Helix-hairpin-helix domain (HHH_5)

(72-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

36.634

99.02

0.363
  ruvA Streptococcus pneumoniae R6

36.634

99.02

0.363
  ruvA Streptococcus pneumoniae D39

36.634

99.02

0.363