Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   ABG777_RS00695 Genome accession   NZ_CP157073
Coordinates   150532..151671 (+) Length   379 a.a.
NCBI ID   WP_420063034.1    Uniprot ID   -
Organism   Leuconostoc lactis strain APC3969     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 145532..156671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABG777_RS00675 yycF 145692..146399 (+) 708 WP_029510319.1 response regulator YycF -
  ABG777_RS00680 walK 146496..148367 (+) 1872 WP_420063032.1 cell wall metabolism sensor histidine kinase WalK -
  ABG777_RS00685 yycH 148357..149664 (+) 1308 WP_189428917.1 two-component system activity regulator YycH -
  ABG777_RS00690 yycI 149693..150469 (+) 777 WP_420063033.1 two-component system regulatory protein YycI -
  ABG777_RS00695 htrA 150532..151671 (+) 1140 WP_420063034.1 S1C family serine protease Regulator
  ABG777_RS00700 rlmH 152323..152802 (+) 480 WP_010004870.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  ABG777_RS00705 - 152875..153018 (-) 144 WP_010000998.1 hypothetical protein -
  ABG777_RS00710 mutY 153142..154158 (+) 1017 WP_189428915.1 A/G-specific adenine glycosylase -
  ABG777_RS00715 - 154164..155267 (+) 1104 WP_010004869.1 AI-2E family transporter -
  ABG777_RS00720 - 155312..155698 (+) 387 WP_010004868.1 DUF6508 domain-containing protein -
  ABG777_RS00735 - 156092..156427 (+) 336 WP_010004867.1 PadR family transcriptional regulator -

Sequence


Protein


Download         Length: 379 a.a.        Molecular weight: 39412.82 Da        Isoelectric Point: 8.8961

>NTDB_id=1003974 ABG777_RS00695 WP_420063034.1 150532..151671(+) (htrA) [Leuconostoc lactis strain APC3969]
MADKSLTKIIVTGAVAGALGGGAMLYGQRGLEDMQQSQQKVTTKADKTVTIPKDATATSAYNKVSDAVVSVLNFSQTGKD
SFQEVSEGSGVIYKKSGDAAYVVTNNHVINGAAQIQVMLHDGQKVTATLVGKDAMTDLAVLKIAADKVTTTAEFGDSNKI
QVGQKVLAIGSPLGAQYASSVTEGIISAKKRLVESSSEDGQNYGGSTVIQTDAAINPGNSGGPLINFAGQVIGINSMKLS
SSASGTSVEGMGFAIPSNQVVDIVNKLVKYGQVTRPVIGIGLVELSAVTVDDQKSLLKIPDTVKGGVVVMSLTPNGPAAK
AGIQKYDVITGIDGKTVTGQADLREELYKHDLNDTVTITYYHQAEKKTVKVKLTQKLGS

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=1003974 ABG777_RS00695 WP_420063034.1 150532..151671(+) (htrA) [Leuconostoc lactis strain APC3969]
ATGGCAGATAAATCATTAACAAAAATTATCGTAACCGGCGCAGTTGCTGGCGCTCTTGGTGGTGGGGCGATGTTGTATGG
GCAGCGCGGCTTAGAAGATATGCAACAATCACAACAAAAAGTCACCACCAAGGCTGATAAGACGGTGACAATTCCCAAGG
ATGCAACGGCGACTTCAGCTTACAATAAAGTGTCAGATGCGGTTGTTTCTGTGTTGAATTTCTCTCAAACGGGCAAAGAT
TCTTTTCAAGAAGTGTCTGAAGGCTCAGGCGTGATTTACAAGAAGTCTGGGGATGCGGCCTATGTGGTGACGAATAATCA
CGTGATTAACGGAGCAGCCCAAATTCAAGTCATGTTACATGATGGGCAAAAAGTGACGGCTACGTTGGTTGGAAAGGATG
CCATGACGGATTTGGCGGTGTTAAAGATCGCGGCCGACAAGGTGACCACAACGGCCGAATTTGGTGATTCCAATAAAATC
CAAGTGGGGCAGAAGGTCTTGGCTATTGGCTCACCGTTGGGCGCACAATATGCCTCATCGGTCACAGAGGGGATTATTTC
GGCTAAGAAGCGTTTGGTGGAGTCTTCTTCTGAAGATGGGCAAAATTATGGGGGCTCAACGGTTATTCAAACCGATGCGG
CCATTAACCCTGGTAATTCCGGTGGTCCATTAATTAATTTTGCTGGCCAAGTGATTGGGATTAACTCAATGAAACTATCT
TCTTCTGCTTCAGGTACGAGTGTTGAAGGGATGGGATTTGCTATTCCGTCAAATCAAGTGGTGGATATTGTTAATAAGTT
GGTCAAGTATGGCCAAGTGACGCGTCCAGTTATTGGCATTGGATTAGTTGAATTATCAGCTGTGACGGTTGATGACCAAA
AGTCACTGTTGAAGATCCCAGATACAGTTAAGGGCGGCGTTGTTGTCATGAGTTTAACTCCTAATGGACCAGCGGCTAAA
GCTGGTATTCAGAAATACGACGTGATTACTGGGATTGATGGCAAAACCGTGACGGGGCAAGCTGACTTGCGTGAAGAATT
ATATAAGCATGATCTTAATGATACGGTCACAATTACTTATTATCACCAAGCAGAGAAAAAGACTGTTAAAGTTAAATTAA
CACAAAAATTAGGAAGTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mitis NCTC 12261

47.532

100

0.483

  htrA Streptococcus pneumoniae Rx1

46.787

100

0.48

  htrA Streptococcus pneumoniae D39

46.787

100

0.48

  htrA Streptococcus pneumoniae R6

46.787

100

0.48

  htrA Streptococcus pneumoniae TIGR4

46.787

100

0.48

  htrA Streptococcus gordonii str. Challis substr. CH1

47.2

98.945

0.467

  htrA Streptococcus mutans UA159

49.118

89.71

0.441


Multiple sequence alignment