Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABH008_RS00220 Genome accession   NZ_CP157005
Coordinates   55881..57389 (+) Length   502 a.a.
NCBI ID   WP_347987864.1    Uniprot ID   -
Organism   Methylomonas sp. AM2-LC     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 50881..62389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABH008_RS00195 - 50952..51926 (-) 975 WP_347987859.1 calcium/sodium antiporter -
  ABH008_RS00200 - 51984..52811 (-) 828 WP_347987860.1 undecaprenyl-diphosphate phosphatase -
  ABH008_RS00205 - 53054..54280 (-) 1227 WP_347987861.1 isocitrate dehydrogenase (NADP(+)) -
  ABH008_RS00210 - 54382..54969 (+) 588 WP_347987862.1 MarR family winged helix-turn-helix transcriptional regulator -
  ABH008_RS00215 - 54974..55225 (+) 252 WP_347987863.1 accessory factor UbiK family protein -
  ABH008_RS00220 comM 55881..57389 (+) 1509 WP_347987864.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABH008_RS00225 - 57500..58108 (+) 609 WP_347987865.1 nitroreductase family protein -
  ABH008_RS00230 - 58081..58776 (+) 696 WP_347987866.1 glutathione S-transferase -
  ABH008_RS00235 gmd 58799..59920 (-) 1122 WP_347987867.1 GDP-mannose 4,6-dehydratase -
  ABH008_RS00240 - 60210..60512 (-) 303 WP_347987868.1 hypothetical protein -
  ABH008_RS00245 - 60852..61406 (+) 555 WP_347987869.1 C40 family peptidase -
  ABH008_RS00250 - 61411..62082 (-) 672 WP_347987870.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 54403.48 Da        Isoelectric Point: 7.3014

>NTDB_id=1003815 ABH008_RS00220 WP_347987864.1 55881..57389(+) (comM) [Methylomonas sp. AM2-LC]
MSLAVVYSRGRSGIAAPLVTVEVQVSSGLPALNIVGLPETAVKESRDRVRGAIINSRFEFPIGRVTINLAPADLPKEGGR
FDLAIALGILAASQQIPKNRLDEYECIGELSLGGELRMIPGALPVAIQTRNANRQLILPIGNADEAALIKDAQLLPANSL
LEVCAHICGQQLIELQVSQPELIEDICEIDFADVHGQYHVKRAMEIAAAGAHNLLMLGPPGTGKSMLAARLPTILPELSE
QQAQETAAIASISDKGLDLSRWRLPPFRAPHHTASAAAMVGGGSNPKPGEISLSHNGTLFLDELPEFDRKVLEVLREPLE
TGHITISRANRQADFPANFQLIAAMNPCPCGYLGDASGRCHCSSEQVARYRARVSGPLLDRVDMHLDVPRVALNMLRKGS
AEGEERSSTIRQRVIAARQKAFNRQGKTNSALNAADIKVFCDLPEAGHQLLEQALEKFGLSHRAYHRILKLARTIADLAN
AETISITHLSEAISYRKLDRTR

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=1003815 ABH008_RS00220 WP_347987864.1 55881..57389(+) (comM) [Methylomonas sp. AM2-LC]
ATGTCTTTGGCAGTGGTGTACAGTCGCGGACGATCCGGTATAGCCGCTCCGCTAGTAACTGTGGAAGTGCAGGTCAGTAG
TGGTTTGCCTGCGCTTAATATTGTTGGCTTACCTGAAACCGCCGTTAAAGAAAGCAGGGACCGAGTTCGGGGTGCTATCA
TCAACTCTCGTTTCGAGTTCCCTATTGGCAGGGTTACCATCAATCTTGCTCCTGCCGATCTACCCAAAGAAGGCGGGCGC
TTTGATCTGGCCATTGCCTTAGGCATACTGGCCGCCTCTCAACAAATTCCCAAAAATCGCTTAGACGAATACGAATGTAT
TGGTGAATTATCTTTGGGGGGTGAATTACGCATGATACCAGGTGCATTACCAGTAGCCATCCAAACCCGCAATGCCAACC
GGCAATTAATTTTACCCATAGGCAATGCCGATGAAGCCGCCTTAATCAAAGACGCTCAATTATTACCCGCTAACAGCTTG
TTAGAAGTATGTGCGCATATTTGCGGCCAACAACTCATTGAGTTGCAAGTATCCCAACCAGAATTAATTGAAGATATTTG
TGAAATCGATTTTGCCGATGTACACGGCCAATACCACGTTAAACGTGCAATGGAAATCGCAGCAGCCGGTGCTCATAACT
TACTGATGCTTGGCCCACCAGGAACGGGAAAATCCATGCTGGCAGCACGTTTACCGACTATTTTGCCAGAACTTAGCGAA
CAACAAGCGCAGGAAACTGCGGCGATTGCCTCCATTAGCGACAAGGGACTGGATCTGTCACGCTGGCGCTTACCGCCATT
CAGAGCACCGCACCATACCGCTTCAGCCGCTGCTATGGTTGGTGGCGGCAGCAATCCTAAACCCGGAGAAATTTCCTTAT
CGCACAATGGCACTTTATTTTTGGACGAACTACCTGAGTTTGACCGCAAAGTGCTGGAGGTATTGCGAGAACCTCTAGAA
ACCGGACACATTACTATTTCCCGCGCCAATCGTCAGGCCGACTTTCCGGCCAACTTTCAATTAATTGCAGCTATGAATCC
CTGCCCGTGTGGCTATTTGGGCGATGCATCTGGTCGATGCCACTGCTCATCCGAACAGGTCGCCCGCTATCGCGCCCGGG
TATCTGGCCCACTACTCGATCGGGTGGATATGCATCTGGACGTGCCGCGAGTGGCATTGAACATGTTACGCAAAGGCTCG
GCAGAAGGCGAAGAACGCAGTTCTACAATACGGCAACGAGTAATTGCTGCTCGGCAAAAAGCATTTAACCGCCAAGGTAA
AACCAATTCCGCATTAAATGCAGCCGATATTAAAGTATTTTGCGATTTACCAGAAGCTGGCCATCAATTACTGGAACAGG
CTTTGGAAAAGTTTGGTTTATCACATCGCGCTTATCACCGCATTTTAAAACTGGCACGCACCATTGCAGATCTAGCTAAC
GCCGAAACTATATCCATTACACATTTAAGTGAAGCCATTAGTTATCGAAAATTGGATAGGACACGCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.2

99.602

0.55
  comM Vibrio campbellii strain DS40M4

53

99.602

0.528
  comM Glaesserella parasuis strain SC1401

51.779

100

0.522
  comM Haemophilus influenzae Rd KW20

49.704

100

0.502
  comM Legionella pneumophila str. Paris

50.704

99.004

0.502
  comM Legionella pneumophila strain ERS1305867

50.704

99.004

0.502
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.793

100

0.466

Multiple sequence alignment