Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   EL297_RS08620 Genome accession   NZ_LR134525
Coordinates   1442190..1442471 (-) Length   93 a.a.
NCBI ID   WP_002244020.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NCTC10025     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1437190..1447471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL297_RS08585 (NCTC10025_01435) - 1437491..1438129 (-) 639 WP_002236745.1 7-carboxy-7-deazaguanine synthase QueE -
  EL297_RS08590 (NCTC10025_01436) - 1438126..1438496 (-) 371 Protein_1425 DUF1304 domain-containing protein -
  EL297_RS08595 (NCTC10025_01437) queD 1438765..1439187 (-) 423 WP_002229103.1 6-carboxytetrahydropterin synthase QueD -
  EL297_RS08600 (NCTC10025_01438) - 1439194..1439712 (-) 519 WP_002243792.1 DUF1543 domain-containing protein -
  EL297_RS08605 (NCTC10025_01439) queC 1439740..1440399 (-) 660 WP_002245934.1 7-cyano-7-deazaguanine synthase QueC -
  EL297_RS08610 - 1440584..1440788 (-) 205 Protein_1429 NAD(P)H-quinone oxidoreductase -
  EL297_RS08615 (NCTC10025_01440) - 1440943..1442169 (+) 1227 WP_002217875.1 YihY family inner membrane protein -
  EL297_RS08620 (NCTC10025_01441) comA 1442190..1442471 (-) 282 WP_002244020.1 ATP-binding cassette domain-containing protein Regulator
  EL297_RS08625 - 1442550..1442684 (-) 135 Protein_1432 IS1595 family transposase -
  EL297_RS08630 (NCTC10025_01443) - 1442683..1443141 (-) 459 WP_002214429.1 hypothetical protein -
  EL297_RS13235 - 1443705..1443908 (-) 204 WP_010980812.1 hypothetical protein -
  EL297_RS08650 (NCTC10025_01445) - 1444448..1445383 (-) 936 WP_002249276.1 immunity 49 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10128.76 Da        Isoelectric Point: 6.2166

>NTDB_id=1003520 EL297_RS08620 WP_002244020.1 1442190..1442471(-) (comA) [Neisseria meningitidis strain NCTC10025]
MIHEEISAMPMGYETLIGDMGSALSGGQKQRIVLARALYCEPKILFLDEATSHLDIANEKAVNANLNGLSIIKIMAAHRK
ETVESADRKMSLG

Nucleotide


Download         Length: 282 bp        

>NTDB_id=1003520 EL297_RS08620 WP_002244020.1 1442190..1442471(-) (comA) [Neisseria meningitidis strain NCTC10025]
ATGATTCACGAAGAAATCTCCGCCATGCCTATGGGCTATGAAACCTTAATCGGCGATATGGGCAGCGCACTGTCAGGCGG
ACAAAAACAACGCATCGTATTGGCGCGGGCCTTATATTGCGAACCGAAAATCCTATTTTTAGATGAAGCGACCAGCCATT
TGGATATTGCCAATGAAAAAGCAGTCAATGCAAACTTGAATGGCTTGTCTATCATAAAAATTATGGCGGCACACAGAAAG
GAAACGGTGGAATCAGCAGATAGGAAAATGTCTTTAGGATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(14-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

46.154

97.849

0.452
  comA Streptococcus mitis NCTC 12261

45.055

97.849

0.441
  comA Streptococcus pneumoniae Rx1

45.055

97.849

0.441
  comA Streptococcus pneumoniae D39

45.055

97.849

0.441
  comA Streptococcus pneumoniae TIGR4

45.055

97.849

0.441
  comA Streptococcus pneumoniae R6

45.055

97.849

0.441
  comA/nlmT Streptococcus mutans UA159

47.126

93.548

0.441
  comA Streptococcus gordonii str. Challis substr. CH1

43.956

97.849

0.43

Multiple sequence alignment