Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABHM55_RS20920 Genome accession   NZ_CP156931
Coordinates   4421510..4423030 (+) Length   506 a.a.
NCBI ID   WP_023331589.1    Uniprot ID   A0A2J0PD61
Organism   Enterobacter kobei strain 2024CK-00368     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4416510..4428030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABHM55_RS20900 (ABHM55_20900) ilvE 4418076..4419005 (-) 930 WP_014885677.1 branched-chain-amino-acid transaminase -
  ABHM55_RS20905 (ABHM55_20905) ilvM 4419024..4419287 (-) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  ABHM55_RS20910 (ABHM55_20910) ilvG 4419284..4420930 (-) 1647 WP_096217707.1 acetolactate synthase 2 catalytic subunit -
  ABHM55_RS20915 (ABHM55_20915) ilvL 4421070..4421168 (-) 99 WP_001311244.1 ilv operon leader peptide -
  ABHM55_RS20920 (ABHM55_20920) comM 4421510..4423030 (+) 1521 WP_023331589.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABHM55_RS20925 (ABHM55_20925) - 4423060..4423398 (-) 339 WP_014885680.1 DUF413 domain-containing protein -
  ABHM55_RS20930 (ABHM55_20930) hdfR 4423517..4424338 (+) 822 WP_014885681.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55055.09 Da        Isoelectric Point: 7.3092

>NTDB_id=1003317 ABHM55_RS20920 WP_023331589.1 4421510..4423030(+) (comM) [Enterobacter kobei strain 2024CK-00368]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLVAGHL
QEVCAWLEGRHELSEPEECDNVIADTPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSTSLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQKGITG
ESSADVRERVIAAQTRQYARQNRLNARLDNAGIRQFCSLNMEDAVWLEETLTRFGLSIRAWQRLLKVARTIADVEGCSDI
QRKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1003317 ABHM55_RS20920 WP_023331589.1 4421510..4423030(+) (comM) [Enterobacter kobei strain 2024CK-00368]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTGAAGGCACCGCTTATTTCTGTAGAGGTTCATCTGAGTAA
TGGGCTACCCGGGCTCACGCTCGTCGGGCTACCTGAAACGACGGTTAAAGAAGCCCGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATACCTTCCCCGCGAAGAAGATCACCATCAACCTGGCTCCCGCCGATCTGCCCAAAGAGGGAGGACGA
TATGATTTACCTATCGCGATTGCGCTTCTCGCAGCCTCTGAGCAGCTTAATACGACCAGGCTAGGCTCGTACGAGTTTGT
GGGAGAACTCGCGCTCACAGGCGCGTTAAGGGGCGTTCCCGGTGCGATATCAGGCGCGCTGGAAGCTATACGTGCAGGAC
GGCAAATCATTGTCGCGAATGAAAATGCATCAGAAGTGAGTCTTATCGCCGAGAAGGGGTGTCTTGTCGCAGGGCATTTA
CAGGAAGTTTGCGCCTGGCTGGAAGGGCGCCATGAACTGTCCGAGCCGGAAGAGTGTGACAATGTTATAGCCGATACCCC
AGAGGATCTCAGCGAGATTATGGGACAGGAGCAAGGGAAACGGGCGCTGGAGATTACGGCCGCAGGTGGACACAATCTTC
TTTTGATCGGCCCGCCTGGTACGGGTAAAACGATGCTGGCGAGCAGGCTGAGTGGCTTGCTGCCACCGCTCAATAATCAT
GAAGCGCTGGAAAGTGCCGCCATTTATAGCCTTATCAGTTCTACCTCGTTGCAAAAACAGTGGCGCCGTCGCCCTTTTCG
TTCACCTCATCATAGTGCTTCACTGACGGCGATGGTCGGCGGTGGATCTATTCCCGGGCCGGGTGAAATATCACTGGCGC
ACAATGGCATTCTGTTTCTCGACGAGCTGCCTGAGTTTGAGCGCCGCGTCCTGGATGCCCTGAGAGAACCCATTGAATCT
GGAGAGATACACATCTCACGCACGCGAGCCAAAATAAGCTATCCCGCGCAGTTTCAGCTGGTCGCTGCGATGAATCCCAG
CCCTACGGGTCATTATCAGGGCAACCATAACCGCTGTACGCCTGAGCAGACATTGCGCTATCTGGGAAAGTTATCCGGCC
CGTTCCTCGACCGTTTCGATTTATCCCTCGAAATCCCCCTTCCCCCGCCGGGCCTGCTCAGGCAAAAAGGCATCACGGGT
GAAAGCTCAGCAGATGTACGCGAGCGGGTCATTGCTGCCCAGACGCGACAATATGCCCGTCAGAACAGGCTGAATGCGCG
GCTGGATAATGCCGGGATCCGGCAGTTTTGTTCTCTTAACATGGAGGATGCGGTTTGGCTGGAGGAAACCTTGACGCGTT
TTGGTCTTTCTATACGCGCGTGGCAGCGTTTGCTGAAAGTGGCCAGAACCATTGCTGACGTGGAGGGTTGTAGTGACATT
CAGAGGAAACACTTGCAGGAGGCGCTGAGCTACCGCGCTATCGATCGTTTGCTGCTCCATCTGCAGAAGTTGCTGGCGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2J0PD61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.153

100

0.585
  comM Vibrio cholerae strain A1552

58.648

99.407

0.583
  comM Glaesserella parasuis strain SC1401

58.185

100

0.583
  comM Vibrio campbellii strain DS40M4

58.333

99.605

0.581
  comM Legionella pneumophila str. Paris

50.101

98.221

0.492
  comM Legionella pneumophila strain ERS1305867

50.101

98.221

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.181

100

0.443

Multiple sequence alignment