Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABEF79_RS14670 Genome accession   NZ_CP156810
Coordinates   2951344..2952765 (+) Length   473 a.a.
NCBI ID   WP_347460798.1    Uniprot ID   -
Organism   Acinetobacter sp. ANC 7454     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2946344..2957765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF79_RS14645 (ABEF79_14645) ribD 2947279..2948367 (-) 1089 WP_347456128.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  ABEF79_RS14650 (ABEF79_14650) nrdR 2948370..2948837 (-) 468 WP_347456127.1 transcriptional regulator NrdR -
  ABEF79_RS14655 (ABEF79_14655) - 2948977..2950377 (-) 1401 WP_034587595.1 ammonium transporter -
  ABEF79_RS14660 (ABEF79_14660) glnK 2950437..2950775 (-) 339 WP_004650081.1 P-II family nitrogen regulator -
  ABEF79_RS14665 (ABEF79_14665) - 2951052..2951279 (+) 228 WP_034587597.1 accessory factor UbiK family protein -
  ABEF79_RS14670 (ABEF79_14670) comM 2951344..2952765 (+) 1422 WP_347460798.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABEF79_RS14675 (ABEF79_14675) - 2952818..2953549 (-) 732 WP_034587601.1 TorF family putative porin -
  ABEF79_RS14680 (ABEF79_14680) tnpA 2953968..2954381 (-) 414 WP_075167884.1 IS200/IS605 family transposase -
  ABEF79_RS14685 (ABEF79_14685) - 2954402..2955460 (+) 1059 WP_034586922.1 RNA-guided endonuclease TnpB family protein -
  ABEF79_RS14690 (ABEF79_14690) - 2955720..2956595 (+) 876 WP_000102417.1 IS982-like element ISAba825 family transposase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 52008.87 Da        Isoelectric Point: 7.5227

>NTDB_id=1003027 ABEF79_RS14670 WP_347460798.1 2951344..2952765(+) (comM) [Acinetobacter sp. ANC 7454]
MSFAKIHTRGLLGLHAPLIEVEVHVSQGMPSLTIVGLPEAAVRESKDRVRSAILNSGYQFPTKRLTINLAPADLPKDGSR
LDLPIALGILLASGQLPENCTDGMEFIGELALDGQLRPISGTLSIAITCQQVQHELILPKENAQEACQLPDFKVFAASHL
KEVCDHLAQTVSLPQIHAQPQTDQQKYPLDLADVKGQLRPRRALEIAAAGGHSLLFRGPPGTGKTLLASRLPSILPPLNT
QENLEVASIYSIANCNHPFGQRPFRAPHHTASAVALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPANFQLIAAMNPCPCGYAFNQDIRCQCSPEMIKRYQNRISGPLLDRIDLHIDVPPLQAYELQMQRQNN
LNMSLNPKQLEQFAPLNAQASKMFELAQQKLNLSARAYHRVLRVARTIADLAASEEIQTQHLSEALSYRGQQS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=1003027 ABEF79_RS14670 WP_347460798.1 2951344..2952765(+) (comM) [Acinetobacter sp. ANC 7454]
ATGTCTTTCGCCAAAATTCATACCCGGGGTCTGCTTGGACTGCATGCCCCGCTGATTGAAGTTGAAGTCCATGTCAGTCA
GGGCATGCCCTCTTTAACCATTGTCGGTCTGCCAGAAGCAGCGGTTCGGGAAAGTAAAGATCGAGTTCGCTCAGCGATTT
TAAATAGTGGCTACCAGTTTCCAACCAAACGCCTGACTATCAATCTAGCGCCAGCCGATCTTCCTAAAGATGGATCCCGT
CTGGACCTGCCAATTGCACTCGGCATATTGCTCGCCTCAGGACAGCTTCCAGAAAACTGTACCGATGGCATGGAATTTAT
TGGTGAGCTGGCCTTAGATGGTCAGCTTCGCCCAATCAGTGGCACCTTAAGCATTGCGATTACCTGTCAGCAGGTACAGC
ATGAATTGATCTTACCGAAGGAAAATGCGCAGGAAGCCTGCCAGTTACCAGATTTTAAGGTCTTTGCCGCCAGTCATTTA
AAAGAAGTCTGTGATCATCTAGCTCAAACAGTTTCATTGCCACAGATTCATGCACAGCCTCAAACAGATCAACAGAAATA
TCCTTTAGATTTAGCGGATGTAAAGGGCCAACTCCGTCCAAGGCGCGCCTTAGAAATTGCTGCCGCGGGTGGACACTCTT
TACTGTTTAGAGGACCTCCGGGTACAGGTAAAACCTTGTTGGCTTCACGTCTGCCAAGTATCTTACCGCCATTAAATACG
CAAGAGAATTTGGAAGTTGCCAGCATCTATTCAATTGCTAATTGCAATCATCCATTTGGGCAGCGCCCCTTCCGTGCACC
ACACCATACGGCATCAGCAGTGGCTCTGGTTGGTGGAGGATCCCATCCTAAACCGGGTGAAATTACTTTGGCACATTTAG
GGGTGCTTTTCCTCGATGAACTGCCTGAATTTGACCGAAAAGTACTAGAGGTCTTACGCCAACCACTCGAATCTAAAGAA
ATTGTGATTTCTCGTGCTTCACGGCAAATTACTTTCCCAGCCAATTTTCAGTTAATTGCAGCGATGAACCCCTGCCCTTG
TGGCTATGCCTTTAATCAGGATATCCGCTGTCAATGCTCTCCAGAAATGATTAAACGTTATCAAAATCGAATTTCTGGCC
CTTTATTAGATCGCATAGACTTGCATATTGATGTACCGCCTCTTCAGGCATATGAACTGCAAATGCAAAGACAGAATAAT
TTGAATATGAGCCTAAATCCTAAGCAATTAGAACAGTTTGCACCACTTAACGCACAAGCCAGCAAGATGTTTGAACTTGC
CCAACAAAAGCTCAATCTCTCAGCACGTGCCTATCATCGGGTATTACGTGTGGCACGGACGATTGCCGATCTGGCAGCAA
GTGAAGAAATTCAGACTCAGCATTTATCTGAAGCACTCTCTTACCGAGGACAACAAAGCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(389-469)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

49.9

100

0.526
  comM Glaesserella parasuis strain SC1401

49.299

100

0.52
  comM Legionella pneumophila strain ERS1305867

49.597

100

0.52
  comM Legionella pneumophila str. Paris

49.597

100

0.52
  comM Vibrio cholerae strain A1552

49.293

100

0.516
  comM Vibrio campbellii strain DS40M4

48.687

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.817

100

0.486

Multiple sequence alignment