Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABEF84_RS01235 Genome accession   NZ_CP156795
Coordinates   255750..257237 (-) Length   495 a.a.
NCBI ID   WP_034587600.1    Uniprot ID   A0A0A3W0A3
Organism   Acinetobacter thermotolerans strain ANC 7912     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 250750..262237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF84_RS01215 (ABEF84_01215) - 252232..252996 (+) 765 WP_347454535.1 TorF family putative porin -
  ABEF84_RS01220 (ABEF84_01220) - 253054..254112 (-) 1059 WP_034586922.1 RNA-guided endonuclease TnpB family protein -
  ABEF84_RS01225 (ABEF84_01225) tnpA 254133..254546 (+) 414 WP_075167884.1 IS200/IS605 family transposase -
  ABEF84_RS01230 (ABEF84_01230) - 254966..255697 (+) 732 WP_034587601.1 TorF family putative porin -
  ABEF84_RS01235 (ABEF84_01235) comM 255750..257237 (-) 1488 WP_034587600.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABEF84_RS01240 (ABEF84_01240) - 257302..257529 (-) 228 WP_034587597.1 accessory factor UbiK family protein -
  ABEF84_RS01245 (ABEF84_01245) glnK 257806..258144 (+) 339 WP_004650081.1 P-II family nitrogen regulator -
  ABEF84_RS01250 (ABEF84_01250) - 258204..259604 (+) 1401 WP_034587595.1 ammonium transporter -
  ABEF84_RS01255 (ABEF84_01255) nrdR 259744..260211 (+) 468 WP_004787309.1 transcriptional regulator NrdR -
  ABEF84_RS01260 (ABEF84_01260) ribD 260214..261302 (+) 1089 WP_034587594.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54479.64 Da        Isoelectric Point: 7.5223

>NTDB_id=1002868 ABEF84_RS01235 WP_034587600.1 255750..257237(-) (comM) [Acinetobacter thermotolerans strain ANC 7912]
MSFAKIHTRGLLGLHAPLIEVEVHVSQGMPSLTIVGLPEAAVRESKDRVRSAILNSGYQFPTKRLTINLAPADLPKDGSR
LDLPIALGILLASGQLPENCTDGMEFIGELALDGQLRPISGTLSIAITCQQVQHELILPKENAQEACQLPDFKVFAASHL
KEVCDHLAQTVSLPQIHAQPQTDQQKYPLDLADVKGQLRPRRALEIAAAGGHSLLFRGPPGTGKTLLASRLPSILPPLNT
QENLEVASIYSIANCNHPFGQRPFRAPHHTASAVALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPANFQLIAAMNPCPCGYAFNQDIRCQCSPEMIKRYQNRISGPLLDRIDLHIDVPPLQAYELQNTQPVE
DSATVRKRVIAAYELQMQRQNNLNMSLNPKQLEQFAPLNAQASKMFELAQQKLNLSARAYHRVLRVARTIADLAASEEIQ
TQHLSEALSYRGQQS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=1002868 ABEF84_RS01235 WP_034587600.1 255750..257237(-) (comM) [Acinetobacter thermotolerans strain ANC 7912]
ATGTCTTTCGCCAAAATTCATACCCGGGGTCTGCTTGGACTGCATGCCCCGCTGATTGAAGTTGAAGTCCATGTCAGTCA
GGGCATGCCCTCTTTAACCATTGTCGGTCTGCCAGAAGCAGCGGTTCGGGAAAGTAAAGATCGAGTTCGCTCAGCGATTT
TAAATAGTGGCTACCAGTTTCCAACCAAACGCCTGACTATCAATCTAGCGCCAGCCGATCTTCCTAAAGATGGATCCCGT
CTGGACCTGCCAATTGCACTCGGCATATTGCTCGCCTCAGGACAGCTTCCAGAAAACTGTACCGATGGCATGGAATTTAT
TGGTGAGCTGGCCTTAGATGGTCAGCTTCGCCCAATCAGTGGCACCTTAAGCATTGCGATTACCTGTCAGCAGGTACAGC
ATGAATTGATCTTACCGAAGGAAAATGCGCAGGAAGCCTGCCAGTTACCAGATTTTAAGGTCTTTGCCGCCAGTCATTTA
AAAGAAGTCTGTGATCATCTAGCTCAAACAGTTTCATTGCCACAGATTCATGCACAGCCTCAAACAGATCAACAGAAATA
TCCTTTAGATTTAGCGGATGTAAAGGGCCAACTCCGTCCAAGGCGCGCCTTAGAAATTGCTGCCGCGGGTGGACACTCTT
TACTGTTTAGAGGACCTCCGGGTACAGGTAAAACCTTGTTGGCTTCACGTCTGCCAAGTATCTTACCGCCATTAAATACG
CAAGAGAATTTGGAAGTTGCCAGCATCTATTCAATTGCTAATTGCAATCATCCATTTGGGCAGCGCCCCTTCCGTGCACC
ACACCATACGGCATCAGCAGTGGCTCTGGTTGGTGGAGGATCCCATCCTAAACCGGGTGAAATTACTTTGGCACATTTAG
GGGTGCTTTTCCTCGATGAACTGCCTGAATTTGACCGAAAAGTACTAGAGGTCTTACGCCAACCACTCGAATCTAAAGAA
ATTGTGATTTCTCGTGCTTCACGGCAAATTACTTTCCCAGCCAATTTTCAGTTAATTGCAGCGATGAACCCCTGCCCTTG
TGGCTATGCCTTTAATCAGGATATCCGCTGTCAATGCTCTCCAGAAATGATTAAACGTTATCAAAATCGAATTTCTGGCC
CTTTATTAGATCGCATAGACTTGCATATTGATGTACCGCCTCTTCAGGCATATGAACTGCAGAATACCCAACCTGTTGAA
GATTCGGCTACAGTTAGAAAACGTGTCATTGCCGCATATGAACTGCAAATGCAAAGACAGAATAATTTGAATATGAGCCT
AAATCCTAAGCAATTAGAACAGTTTGCACCACTTAACGCACAAGCCAGCAAGATGTTTGAACTTGCCCAACAAAAGCTCA
ATCTCTCAGCACGTGCCTATCATCGGGTATTACGTGTGGCACGGACGATTGCCGATCTGGCAGCAAGTGAAGAAATTCAG
ACTCAGCATTTATCTGAAGCACTCTCTTACCGAGGACAACAAAGCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A3W0A3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.904

100

0.523
  comM Glaesserella parasuis strain SC1401

51.102

100

0.515
  comM Legionella pneumophila strain ERS1305867

51.008

100

0.511
  comM Legionella pneumophila str. Paris

51.008

100

0.511
  comM Vibrio cholerae strain A1552

50.909

100

0.509
  comM Vibrio campbellii strain DS40M4

49.697

100

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.813

100

0.475

Multiple sequence alignment