Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABEF90_RS01265 Genome accession   NZ_CP156793
Coordinates   266434..267921 (-) Length   495 a.a.
NCBI ID   WP_347474107.1    Uniprot ID   -
Organism   Acinetobacter thermotolerans strain ANC 7914     
Function   require for natural transformation (predicted from homology)   
Unclear

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 264921..277019 266434..267921 within 0


Gene organization within MGE regions


Location: 264921..277019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF90_RS01255 (ABEF90_01255) tnpA 264921..265334 (-) 414 WP_075167884.1 IS200/IS605 family transposase -
  ABEF90_RS01260 (ABEF90_01260) - 265355..266412 (+) 1058 Protein_240 RNA-guided endonuclease InsQ/TnpB family protein -
  ABEF90_RS01265 (ABEF90_01265) comM 266434..267921 (-) 1488 WP_347474107.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABEF90_RS01270 (ABEF90_01270) - 267986..268213 (-) 228 WP_347474108.1 accessory factor UbiK family protein -
  ABEF90_RS01275 (ABEF90_01275) glnK 268490..268828 (+) 339 WP_004281042.1 P-II family nitrogen regulator -
  ABEF90_RS01280 (ABEF90_01280) - 268888..270288 (+) 1401 WP_034587595.1 ammonium transporter -
  ABEF90_RS01285 (ABEF90_01285) nrdR 270428..270895 (+) 468 WP_004787309.1 transcriptional regulator NrdR -
  ABEF90_RS01290 (ABEF90_01290) ribD 270898..271986 (+) 1089 WP_034587594.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  ABEF90_RS01295 (ABEF90_01295) - 271983..273275 (+) 1293 WP_034587593.1 DNA adenine methylase -
  ABEF90_RS01300 (ABEF90_01300) - 273298..273957 (+) 660 WP_034587592.1 riboflavin synthase -
  ABEF90_RS01305 (ABEF90_01305) - 274067..274612 (+) 546 WP_034587590.1 VTT domain-containing protein -
  ABEF90_RS01310 (ABEF90_01310) - 274732..275595 (-) 864 WP_004679438.1 IS982 family transposase -
  ABEF90_RS01315 (ABEF90_01315) - 275715..277019 (+) 1305 WP_347453003.1 IS4 family transposase -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54484.62 Da        Isoelectric Point: 7.1874

>NTDB_id=1002829 ABEF90_RS01265 WP_347474107.1 266434..267921(-) (comM) [Acinetobacter thermotolerans strain ANC 7914]
MSFAKIHTRGLLGLHAPLIEVEVHVSQGMPSLTIVGLPEAAVRESKDRVRSAILNSDYQFPTKRLTINLAPADLPKDGSR
LDLPIALGILLASGQLPENCTDGMEFIGELALDGQLRPINGILSIAIACQQAQHELILPKENAQEACQLPDFKVFAASHL
KEVCDHLAQTVSLPQIHAQPQTDQQKYPLDLADVKGQLRPRRALEIAAAGGHSLLFRGPPGTGKTLLASRLPSILPPLNT
QENLEVASIYSIANCNHPFGQRPFRAPHHTASAVALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPANFQLIAAMNPCPCGYAFNQDIRCQCSPEMIKRYQNRISGPLLDRIDLHIDVPPLQAYELQNTQPVE
DSATVRKRVIAAYELQMQRQNNLNMSLNPKQLEQFAPLNAQASQMLELAQQKLNLSARAYHRVLRVARTIADLAASEEIQ
TQHLSEALSYRGQQS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=1002829 ABEF90_RS01265 WP_347474107.1 266434..267921(-) (comM) [Acinetobacter thermotolerans strain ANC 7914]
ATGTCTTTTGCCAAAATTCATACTCGGGGGCTGCTTGGACTGCATGCTCCGCTGATTGAAGTTGAAGTCCATGTCAGTCA
GGGGATGCCCTCTTTAACCATTGTGGGTCTGCCAGAAGCAGCAGTTCGGGAAAGTAAAGACCGGGTTCGTTCAGCAATTT
TAAATAGTGATTACCAGTTTCCAACCAAACGCCTGACCATCAATCTGGCACCTGCCGATCTCCCTAAAGACGGATCACGA
TTGGATCTACCAATTGCACTCGGCATATTGCTTGCTTCTGGGCAACTTCCAGAAAATTGTACCGATGGCATGGAGTTTAT
TGGTGAGCTGGCCTTAGATGGTCAACTCCGTCCGATCAATGGCATCTTAAGTATTGCGATTGCCTGTCAGCAAGCCCAGC
ATGAACTGATCTTGCCGAAGGAAAATGCGCAGGAAGCCTGCCAGTTACCCGATTTTAAGGTGTTTGCTGCTAGCCACTTA
AAAGAGGTATGTGATCATCTAGCTCAAACAGTTTCATTGCCACAGATTCATGCACAGCCTCAAACAGATCAACAGAAATA
TCCTTTAGATTTAGCGGATGTAAAGGGCCAACTCCGTCCAAGGCGCGCCTTAGAAATTGCTGCCGCGGGTGGACACTCTT
TACTGTTTAGAGGACCTCCGGGTACAGGTAAAACCTTGTTGGCTTCACGTCTGCCAAGTATCTTACCGCCATTAAATACG
CAAGAGAATTTGGAAGTTGCCAGCATCTATTCAATTGCTAATTGCAATCATCCATTTGGGCAGCGCCCCTTCCGTGCACC
ACACCATACGGCATCAGCAGTGGCTCTGGTTGGTGGAGGATCCCATCCTAAACCGGGTGAAATTACTTTGGCACATTTAG
GGGTGCTTTTCCTCGATGAACTGCCTGAATTTGACCGAAAAGTACTAGAGGTCTTACGCCAACCACTCGAATCTAAAGAA
ATTGTGATTTCTCGTGCTTCACGGCAAATTACTTTCCCAGCCAATTTTCAGTTAATTGCAGCGATGAACCCCTGCCCTTG
TGGCTATGCCTTTAATCAGGATATCCGCTGTCAATGCTCTCCAGAAATGATTAAACGTTATCAAAATCGAATTTCTGGCC
CTTTATTAGATCGCATAGACTTGCATATTGATGTACCGCCTCTTCAGGCATATGAACTGCAGAATACCCAACCTGTTGAA
GATTCGGCTACAGTTAGAAAACGTGTCATTGCCGCATATGAACTGCAAATGCAAAGACAGAATAATTTGAATATGAGCCT
AAATCCTAAGCAATTAGAACAGTTTGCACCACTTAACGCACAAGCCAGCCAGATGCTTGAACTTGCCCAGCAAAAACTAA
ACCTCTCTGCACGTGCATACCATCGGGTTTTACGTGTAGCACGAACAATTGCCGATCTGGCAGCAAGTGAAGAGATTCAG
ACTCAGCATTTATCTGAAGCACTCTCTTACCGAGGACAACAAAGCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

52.305

100

0.527
  comM Glaesserella parasuis strain SC1401

51.703

100

0.521
  comM Legionella pneumophila strain ERS1305867

51.411

100

0.515
  comM Legionella pneumophila str. Paris

51.411

100

0.515
  comM Vibrio cholerae strain A1552

51.111

100

0.511
  comM Vibrio campbellii strain DS40M4

50.101

100

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.813

100

0.475

Multiple sequence alignment