Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABEF86_RS14245 Genome accession   NZ_CP156780
Coordinates   2892746..2894233 (+) Length   495 a.a.
NCBI ID   WP_347473294.1    Uniprot ID   -
Organism   Acinetobacter thermotolerans strain ANC 7933     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2887746..2899233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF86_RS14220 (ABEF86_14220) ribD 2888681..2889769 (-) 1089 WP_034587594.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  ABEF86_RS14225 (ABEF86_14225) nrdR 2889772..2890239 (-) 468 WP_004787309.1 transcriptional regulator NrdR -
  ABEF86_RS14230 (ABEF86_14230) - 2890379..2891779 (-) 1401 WP_034587595.1 ammonium transporter -
  ABEF86_RS14235 (ABEF86_14235) glnK 2891839..2892177 (-) 339 WP_004650081.1 P-II family nitrogen regulator -
  ABEF86_RS14240 (ABEF86_14240) - 2892454..2892681 (+) 228 WP_034587597.1 accessory factor UbiK family protein -
  ABEF86_RS14245 (ABEF86_14245) comM 2892746..2894233 (+) 1488 WP_347473294.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABEF86_RS14250 (ABEF86_14250) - 2894255..2895313 (-) 1059 WP_034586922.1 RNA-guided endonuclease TnpB family protein -
  ABEF86_RS14255 (ABEF86_14255) tnpA 2895334..2895747 (+) 414 WP_347473295.1 IS200/IS605 family transposase -
  ABEF86_RS14265 (ABEF86_14265) - 2897211..2897594 (+) 384 WP_001055585.1 transposase -
  ABEF86_RS14270 (ABEF86_14270) tnpB 2897591..2897926 (+) 336 WP_347473296.1 IS66 family insertion sequence element accessory protein TnpB -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54445.58 Da        Isoelectric Point: 7.3452

>NTDB_id=1002738 ABEF86_RS14245 WP_347473294.1 2892746..2894233(+) (comM) [Acinetobacter thermotolerans strain ANC 7933]
MSFAKIHTRGLLGLHAPLIEVEVHVSQGMPSLTIVGLPEAAVRESKDRVRSAILNSGYQFPTKRLTINLAPADLPKDGSR
LDLPIALGILLASGQLPENCTDGMEFIGELALDGQLRPISGTLSIAITCQQVQHELILPKENAQEACQLPDFKVFAASHL
KEVCDHLAQTVSLPQIHAQPQTDQQKYPLDLADVKGQLRPRRALEIAAAGGHSLLFRGPPGTGKTLLASRLPSILPPLNT
QENLEVASIYSIANCNHPFGQRPFRAPHHTASAVALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPANFQLIAAMNPCPCGYAFNQDIRCQCSPEMIKRYQNRISGPLLDRIDLHIDVPPLQAYELQNTQPVE
DSATVRKRVIAAYELQMQRQNNLNMSLNPKQLEQFAPLNAQASQMLELAQQKLNLSARAYHRVLRVARTIADLAASEEIQ
TQHLSEALSYRGQQS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=1002738 ABEF86_RS14245 WP_347473294.1 2892746..2894233(+) (comM) [Acinetobacter thermotolerans strain ANC 7933]
ATGTCTTTCGCCAAAATTCATACCCGGGGTCTGCTTGGACTGCATGCCCCGCTGATTGAAGTTGAAGTCCATGTCAGTCA
GGGCATGCCCTCTTTAACCATTGTCGGTCTGCCAGAAGCAGCGGTTCGGGAAAGTAAAGATCGAGTTCGCTCAGCGATTT
TAAATAGTGGCTACCAGTTTCCAACCAAACGCCTGACTATCAATCTAGCGCCAGCCGATCTTCCTAAAGATGGATCCCGT
CTGGACCTGCCAATTGCACTCGGCATATTGCTCGCCTCAGGACAGCTTCCAGAAAACTGTACCGATGGCATGGAATTTAT
TGGTGAGCTGGCCTTAGATGGTCAGCTTCGCCCAATCAGTGGCACCTTAAGCATTGCGATTACCTGTCAGCAGGTACAGC
ATGAATTGATCTTACCGAAGGAAAATGCGCAGGAAGCCTGCCAGTTACCAGATTTTAAGGTCTTTGCCGCCAGTCATTTA
AAAGAAGTCTGTGATCATCTAGCTCAAACAGTTTCATTGCCACAGATTCATGCACAGCCTCAAACAGATCAACAGAAATA
TCCTTTAGATTTAGCGGATGTAAAGGGCCAACTCCGTCCAAGGCGCGCCTTAGAAATTGCTGCCGCGGGTGGACACTCTT
TACTGTTTAGAGGACCTCCGGGTACAGGTAAAACCTTGTTGGCTTCACGTCTGCCAAGTATCTTACCGCCATTAAATACG
CAAGAGAATTTGGAAGTTGCCAGCATCTATTCAATTGCTAATTGCAATCATCCATTTGGGCAGCGCCCCTTCCGTGCACC
ACACCATACGGCATCAGCAGTGGCTCTGGTTGGTGGAGGATCCCATCCTAAACCGGGTGAAATTACTTTGGCACATTTAG
GGGTGCTTTTCCTCGATGAACTGCCTGAATTTGACCGAAAAGTACTAGAGGTCTTACGCCAACCACTCGAATCTAAAGAA
ATTGTGATTTCTCGTGCTTCACGGCAAATTACTTTCCCAGCCAATTTTCAGTTAATTGCAGCGATGAACCCCTGCCCTTG
TGGCTATGCCTTTAATCAGGATATCCGCTGTCAATGCTCTCCAGAAATGATTAAACGTTATCAAAATCGAATTTCTGGCC
CTTTATTAGATCGCATAGACTTGCATATTGATGTACCGCCTCTTCAGGCATATGAACTGCAGAATACCCAACCTGTTGAA
GATTCGGCTACAGTTAGAAAACGTGTCATTGCCGCATATGAACTGCAAATGCAAAGACAGAATAATTTGAATATGAGCCT
AAATCCTAAGCAATTAGAACAGTTTGCACCACTTAACGCACAAGCCAGCCAGATGCTTGAACTTGCCCAGCAAAAACTAA
ACCTCTCTGCACGTGCATACCATCGGGTTTTACGTGTAGCACGAACAATTGCCGATCTGGCAGCAAGTGAAGAGATTCAG
ACTCAGCATTTATCTGAAGCACTCTCTTACCGAGGACAACAAAGCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

52.104

100

0.525
  comM Glaesserella parasuis strain SC1401

51.303

100

0.517
  comM Legionella pneumophila strain ERS1305867

51.21

100

0.513
  comM Legionella pneumophila str. Paris

51.21

100

0.513
  comM Vibrio cholerae strain A1552

51.111

100

0.511
  comM Vibrio campbellii strain DS40M4

49.899

100

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.813

100

0.475

Multiple sequence alignment