Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABFT82_RS21670 Genome accession   NZ_CP156749
Coordinates   4378680..4380017 (-) Length   445 a.a.
NCBI ID   WP_090381642.1    Uniprot ID   A0A1H5ALI4
Organism   Pseudomonas anguilliseptica strain SICAU PA001 isolate largemouth bass     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4373680..4385017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFT82_RS21655 (ABFT82_21655) - 4373809..4377051 (+) 3243 WP_347505890.1 PilC/PilY family type IV pilus protein -
  ABFT82_RS21660 (ABFT82_21660) - 4377033..4377458 (+) 426 WP_347505891.1 type IV pilin protein -
  ABFT82_RS21665 (ABFT82_21665) thiO 4377510..4378610 (+) 1101 WP_347505892.1 glycine oxidase ThiO -
  ABFT82_RS21670 (ABFT82_21670) pilR 4378680..4380017 (-) 1338 WP_090381642.1 sigma-54 dependent transcriptional regulator Regulator
  ABFT82_RS21675 (ABFT82_21675) pilS 4380020..4381609 (-) 1590 WP_090381648.1 ATP-binding protein Regulator
  ABFT82_RS21680 (ABFT82_21680) - 4381599..4381844 (-) 246 WP_090381655.1 PP0621 family protein -
  ABFT82_RS21685 (ABFT82_21685) - 4382057..4383041 (-) 985 Protein_4261 outer membrane protein assembly factor BamD -
  ABFT82_RS21690 (ABFT82_21690) rluD 4383189..4384163 (+) 975 WP_090381660.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ABFT82_RS21695 (ABFT82_21695) pgeF 4384211..4384936 (+) 726 WP_090381665.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49705.28 Da        Isoelectric Point: 5.6384

>NTDB_id=1002530 ABFT82_RS21670 WP_090381642.1 4378680..4380017(-) (pilR) [Pseudomonas anguilliseptica strain SICAU PA001 isolate largemouth bass]
MTRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAKEPFDLCLTDMRLPDGTGLELVQHILLRHPQVPVAM
ITAYGSLDTAINALKAGAFDFLTKPVDLGRLRELVAAALRLRSADGEELPVDSRLLGDSPPMKAMRKQILKLARSQAPVY
ISGESGSGKELVARLVHEQGSRGEQPFIPVNCGAIPTELMESEFFGHKKGSFTGAIEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQELIVDVRILCATHKDLAGEVAAGRFRQDLYYRLNVIELRVPALRERREDIALLADIM
LKRLADGTGLSPAKLDDDALEKLKSYRFPGNVRELENMLERAYTLCEDDRITSSDLRLADSVPISENGEANLAQIDNLED
YLEAIERKLIMQALEETRWNRTAAAQRLGLSFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=1002530 ABFT82_RS21670 WP_090381642.1 4378680..4380017(-) (pilR) [Pseudomonas anguilliseptica strain SICAU PA001 isolate largemouth bass]
ATGACCCGCCAGAGAGCCTTGATCGTCGATGACGAACCCGATATTCGCGAACTCCTGGAAATCACTCTGGGACGTATGAA
GCTCGACACCCGCAGCGCACGCAACGTCAAGGAAGCCCGCGAGTGGCTGGCCAAAGAGCCCTTCGACCTGTGCCTCACCG
ACATGCGCCTGCCGGACGGCACCGGCCTGGAGCTGGTGCAACATATTCTGCTGCGCCACCCGCAAGTACCCGTGGCGATG
ATCACCGCTTATGGCAGCCTGGACACCGCAATCAACGCCTTGAAAGCTGGCGCATTCGACTTTCTGACCAAGCCGGTGGA
TCTCGGCCGCCTGCGTGAACTGGTCGCCGCCGCCTTGCGCCTACGCAGCGCCGATGGCGAAGAGCTACCGGTAGACAGCC
GCCTGCTCGGCGACTCACCGCCGATGAAGGCCATGCGCAAACAGATTCTCAAGCTCGCCCGCAGCCAAGCCCCGGTGTAT
ATCAGCGGCGAATCCGGCAGCGGCAAGGAGTTGGTCGCACGACTGGTCCACGAGCAAGGCTCGCGCGGCGAGCAACCCTT
TATCCCGGTCAACTGCGGCGCCATCCCCACCGAACTAATGGAAAGCGAGTTCTTCGGCCACAAGAAGGGCAGCTTTACGG
GCGCCATCGAAGACAAGCAAGGCCTGTTTCAAGCGGCCAACGGCGGCACCCTGTTCCTTGATGAGGTCGCCGACCTGCCA
TTACCGATGCAAGTTAAATTGCTACGCGCGATTCAGGAAAAAGCCGTACGCGCCGTAGGCGGCCAGCAAGAGCTGATTGT
CGATGTGCGCATTCTCTGCGCCACCCACAAGGATCTGGCTGGCGAAGTTGCGGCTGGGCGCTTCCGCCAGGACTTGTACT
ACCGCCTCAACGTCATCGAGCTACGCGTGCCCGCTCTACGCGAACGTCGCGAAGACATCGCCCTGCTGGCCGATATCATG
CTCAAACGCCTAGCCGACGGCACTGGCCTCAGCCCGGCCAAGCTAGATGACGACGCACTGGAGAAGCTCAAGAGTTACCG
CTTCCCCGGCAACGTGCGCGAACTGGAGAACATGCTCGAACGTGCCTACACCCTGTGCGAAGACGATCGCATCACCAGCA
GCGACCTACGCCTGGCAGACAGTGTGCCCATCAGTGAAAACGGCGAAGCCAACCTCGCGCAGATCGACAACCTAGAGGAC
TATCTGGAAGCCATCGAGCGCAAGCTGATCATGCAGGCCCTGGAAGAAACTCGCTGGAACCGCACCGCAGCTGCTCAGCG
TTTAGGCCTAAGCTTTCGCTCAATGCGCTATCGACTAAAGAAACTTGGTATCGACTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H5ALI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

85.169

100

0.852
  pilR Acinetobacter baumannii strain A118

50.327

100

0.519
  luxO Vibrio cholerae strain A1552

37.5

100

0.378

Multiple sequence alignment