Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ABFT82_RS21675 Genome accession   NZ_CP156749
Coordinates   4380020..4381609 (-) Length   529 a.a.
NCBI ID   WP_090381648.1    Uniprot ID   A0A1H5ALQ4
Organism   Pseudomonas anguilliseptica strain SICAU PA001 isolate largemouth bass     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4375020..4386609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFT82_RS21660 (ABFT82_21660) - 4377033..4377458 (+) 426 WP_347505891.1 type IV pilin protein -
  ABFT82_RS21665 (ABFT82_21665) thiO 4377510..4378610 (+) 1101 WP_347505892.1 glycine oxidase ThiO -
  ABFT82_RS21670 (ABFT82_21670) pilR 4378680..4380017 (-) 1338 WP_090381642.1 sigma-54 dependent transcriptional regulator Regulator
  ABFT82_RS21675 (ABFT82_21675) pilS 4380020..4381609 (-) 1590 WP_090381648.1 ATP-binding protein Regulator
  ABFT82_RS21680 (ABFT82_21680) - 4381599..4381844 (-) 246 WP_090381655.1 PP0621 family protein -
  ABFT82_RS21685 (ABFT82_21685) - 4382057..4383041 (-) 985 Protein_4261 outer membrane protein assembly factor BamD -
  ABFT82_RS21690 (ABFT82_21690) rluD 4383189..4384163 (+) 975 WP_090381660.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ABFT82_RS21695 (ABFT82_21695) pgeF 4384211..4384936 (+) 726 WP_090381665.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58638.76 Da        Isoelectric Point: 8.4833

>NTDB_id=1002531 ABFT82_RS21675 WP_090381648.1 4380020..4381609(-) (pilS) [Pseudomonas anguilliseptica strain SICAU PA001 isolate largemouth bass]
MNADFSLSGEQRWRILRLYHLYRLVIGITLALLISSDLDAQLLDMMHPTLFRNGSWLYLALNVLIIATVRRPKRLAQVFS
LAMVDVILLSGLFYAAGGTPSGIGNLLIVAVAIANILLRGRIGLLIAAVAATGMIYLTFYLSLSRPAAAAQYVQAGALGA
LCFAAALFVQGLTRRLQVSESLAEQRAADVANLEALNALILQRMRTGILVLDELHRVLLANQGANHLLGHTDLTGKILDP
HCPELIKRMQQWSHNPSLHPASLQAAPDGRVLQPSFIALQRGEHKHTLVFLDDISQIAQQAQQLKLASLGRLTAGIAHEI
RNPLGAISHAAQLLQESEELEGPDLRLAQIIQDHSRRMNLVIENALQLSRRRQAEPQLLDLKYWLHRFASEFRSSAAPGQ
TLHLETSSGSIQTRMDPHQLTQVLSNLVENGLRYSAQKNRHGQVWLKLFRDPESELPVLEVLDDGPGVSEEQLHHLFEPF
YTTENKGTGLGLYISRELCESNQARLDYKLREGGGSCLRITFAHPRKLS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=1002531 ABFT82_RS21675 WP_090381648.1 4380020..4381609(-) (pilS) [Pseudomonas anguilliseptica strain SICAU PA001 isolate largemouth bass]
GTGAACGCTGATTTCTCCCTGAGCGGGGAGCAACGCTGGCGAATCCTGCGGCTCTATCACCTATACCGCCTGGTTATCGG
CATTACCCTGGCGCTGCTGATTTCCAGCGACCTCGACGCCCAGCTGCTGGACATGATGCACCCGACGCTGTTTCGCAATG
GCAGCTGGCTGTATCTGGCACTCAACGTCCTGATCATCGCCACCGTACGCCGCCCCAAGCGTCTGGCGCAGGTATTCAGC
CTGGCCATGGTCGACGTGATTCTGCTCTCCGGCCTGTTCTATGCCGCCGGCGGCACACCCAGCGGCATCGGCAACCTGCT
GATTGTCGCAGTGGCGATCGCCAATATCCTGTTGCGCGGACGTATCGGCCTGCTGATTGCCGCAGTCGCCGCAACAGGCA
TGATCTACCTGACCTTCTACCTCAGCCTCAGTCGCCCGGCCGCTGCCGCACAATACGTGCAGGCCGGCGCACTTGGCGCG
CTGTGCTTTGCCGCCGCATTGTTTGTGCAGGGGCTGACACGCCGCCTGCAAGTCAGCGAAAGTCTGGCCGAGCAACGCGC
CGCCGACGTGGCCAATCTGGAAGCACTCAACGCACTGATCCTACAACGTATGCGCACCGGCATTCTGGTGCTGGATGAAT
TACACCGCGTACTACTGGCCAACCAGGGCGCCAACCACCTGCTTGGACATACTGATCTGACCGGCAAGATCCTCGACCCG
CACTGCCCCGAGCTGATCAAGCGCATGCAGCAATGGTCGCACAACCCCAGCCTGCACCCCGCCAGCCTACAAGCGGCCCC
CGACGGCCGAGTGCTGCAGCCAAGCTTTATAGCCCTGCAACGCGGCGAGCATAAACACACGCTGGTCTTCCTCGATGACA
TCTCGCAGATCGCGCAGCAGGCGCAACAGCTCAAGCTTGCCTCACTGGGCCGCCTGACCGCCGGTATCGCCCACGAGATT
CGCAACCCACTAGGGGCGATCAGCCACGCTGCGCAGCTGCTGCAGGAGTCGGAAGAACTGGAAGGTCCGGACCTACGCCT
GGCGCAGATCATTCAGGATCACTCGCGGCGGATGAACCTGGTGATCGAGAACGCTCTGCAACTGTCGCGCCGGCGCCAAG
CAGAACCACAACTGCTCGACCTGAAGTACTGGCTACACCGCTTCGCCAGCGAGTTCCGCAGCAGCGCCGCCCCCGGTCAG
ACTCTGCACCTGGAAACCAGCAGCGGCAGCATTCAAACGCGCATGGACCCACACCAGCTCACCCAAGTGCTGAGCAACCT
GGTGGAAAACGGCCTGCGCTACAGCGCGCAGAAAAACAGGCACGGCCAGGTCTGGCTGAAGCTGTTCCGCGACCCGGAGA
GCGAGCTGCCGGTACTCGAAGTGCTGGACGACGGCCCCGGCGTATCCGAAGAGCAGCTGCACCATCTGTTCGAACCCTTC
TACACCACGGAAAACAAGGGCACCGGCCTGGGCCTGTATATTTCCCGCGAACTGTGCGAAAGCAACCAGGCCCGCCTCGA
CTATAAACTTCGTGAAGGTGGCGGCAGCTGCCTGCGCATCACCTTCGCCCACCCGCGCAAACTGAGCTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(308-372)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H5ALQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

67.495

98.866

0.667

Multiple sequence alignment