Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABFT82_RS16120 Genome accession   NZ_CP156749
Coordinates   3299046..3300545 (-) Length   499 a.a.
NCBI ID   WP_347505445.1    Uniprot ID   -
Organism   Pseudomonas anguilliseptica strain SICAU PA001 isolate largemouth bass     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3294046..3305545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFT82_RS16095 (ABFT82_16095) - 3294057..3294404 (+) 348 WP_090378143.1 NirD/YgiW/YdeI family stress tolerance protein -
  ABFT82_RS16100 (ABFT82_16100) - 3294493..3295413 (+) 921 WP_090378141.1 SdiA-regulated domain-containing protein -
  ABFT82_RS16105 (ABFT82_16105) - 3295394..3296791 (-) 1398 WP_347505444.1 NorM family multidrug efflux MATE transporter -
  ABFT82_RS16110 (ABFT82_16110) - 3296930..3297874 (+) 945 WP_090378135.1 LysR substrate-binding domain-containing protein -
  ABFT82_RS16115 (ABFT82_16115) - 3298200..3298988 (+) 789 WP_090378132.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  ABFT82_RS16120 (ABFT82_16120) comM 3299046..3300545 (-) 1500 WP_347505445.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABFT82_RS16125 (ABFT82_16125) - 3300585..3300854 (-) 270 WP_090378126.1 accessory factor UbiK family protein -
  ABFT82_RS16130 (ABFT82_16130) glnK 3301282..3301620 (+) 339 WP_021700071.1 P-II family nitrogen regulator -
  ABFT82_RS16135 (ABFT82_16135) - 3301656..3302969 (+) 1314 WP_090378123.1 ammonium transporter -
  ABFT82_RS16140 (ABFT82_16140) - 3303047..3304297 (+) 1251 WP_347505446.1 ammonium transporter -
  ABFT82_RS16145 (ABFT82_16145) sutA 3304556..3304885 (+) 330 WP_347505447.1 transcriptional regulator SutA -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 52829.53 Da        Isoelectric Point: 7.5832

>NTDB_id=1002522 ABFT82_RS16120 WP_347505445.1 3299046..3300545(-) (comM) [Pseudomonas anguilliseptica strain SICAU PA001 isolate largemouth bass]
MSLAIVHSRAQVGVEAPAVTVEAHLANGLPSLALVGLPETAVKESKDRVRSAILNCAFEFPPRRITLNLAPADLPKDGGR
FDLAIALGILAASGQVPSSALEPLECLGELALSGAIRPVQGVLPAALAARAAGRTLVVPKANAEEASLASGLTVIAVEHL
LEVAAHLNGQTPIAPYQAQGLLRHVLPYPDLAEVQGQIAAKRALLVAAAGSHNLLFTGPPGTGKTLLASRLPGLLPPLDE
AEALEVAAIHSVASHTPLSAWPQRPFRTPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GQIVIARTRDKVRFPARFQLVAAMNPCPCGHLGDPSGRCRCSSEQIQRYRGKLSGPLLDRIDLHLSVPRETTRLDANAEP
GPSSAELAAQVVQARQQQQARQGCANAHLDLNGVQQHCSLQSEDRQWLENACERLGLSLRAAHRVLKVARTLADLDSAAH
IHRSHLGEALQYRPSISGA

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=1002522 ABFT82_RS16120 WP_347505445.1 3299046..3300545(-) (comM) [Pseudomonas anguilliseptica strain SICAU PA001 isolate largemouth bass]
ATGTCCCTGGCCATAGTCCACAGCCGCGCCCAGGTGGGAGTTGAAGCCCCCGCCGTCACCGTCGAAGCCCACCTGGCCAA
CGGACTGCCCTCGCTGGCCCTGGTCGGCTTGCCGGAAACCGCCGTCAAGGAAAGCAAGGATCGCGTACGCAGCGCCATCC
TCAATTGCGCCTTCGAGTTCCCGCCCAGACGGATTACCTTGAACCTGGCCCCGGCTGATCTGCCGAAAGATGGCGGGCGC
TTCGACCTGGCGATTGCCCTGGGCATTCTCGCCGCCAGCGGACAGGTGCCAAGCAGCGCGCTGGAGCCGCTTGAGTGCCT
GGGTGAACTGGCGTTGTCCGGGGCGATTCGCCCAGTACAGGGCGTCTTGCCCGCAGCACTGGCTGCCCGCGCTGCCGGAC
GCACCTTAGTAGTGCCCAAGGCCAATGCCGAGGAAGCCAGCCTGGCGTCCGGACTGACGGTGATTGCCGTCGAGCACTTA
CTGGAAGTCGCCGCCCACCTCAATGGCCAAACGCCGATTGCGCCTTATCAGGCTCAGGGCTTGCTGCGCCACGTGCTGCC
CTATCCCGATCTGGCCGAGGTACAGGGCCAGATCGCCGCCAAACGCGCGCTGCTGGTGGCGGCAGCTGGCTCGCACAACC
TGCTGTTTACCGGGCCGCCCGGCACCGGCAAAACCCTTCTGGCCAGCCGCCTGCCGGGGCTGCTGCCGCCGCTGGATGAG
GCCGAAGCGCTGGAAGTAGCGGCGATTCATTCTGTCGCCAGCCATACGCCGCTAAGTGCCTGGCCGCAAAGGCCCTTTAG
AACGCCTCATCACAGCGCATCCGGCCCGGCGCTGGTTGGCGGAGGCAGCCGCCCGCAACCGGGGGAAATCACCTTGGCTC
ATCACGGCGTTTTATTCCTCGATGAACTCCCCGAGTTTGACCGCAAGGTTTTGGAGGTGCTGCGTGAGCCCCTGGAAAGC
GGGCAGATCGTGATTGCCCGCACCCGCGACAAGGTGCGCTTTCCCGCGCGGTTTCAATTGGTTGCAGCAATGAACCCCTG
CCCCTGCGGGCACCTGGGCGATCCATCCGGGCGCTGCCGCTGTTCCAGCGAGCAGATCCAGCGCTACCGCGGAAAACTCT
CCGGCCCGCTGCTCGACCGCATCGACCTGCACCTCAGCGTGCCGCGGGAAACCACGCGGCTGGATGCCAACGCCGAACCC
GGCCCAAGTAGCGCCGAACTGGCCGCCCAGGTCGTACAGGCTCGCCAGCAGCAACAGGCACGCCAGGGCTGCGCCAATGC
CCACCTCGATCTCAATGGCGTGCAGCAGCATTGCAGCCTGCAGAGCGAAGACCGTCAATGGCTGGAAAACGCCTGCGAGC
GCCTGGGCCTGAGCCTACGCGCGGCCCACCGGGTGTTGAAGGTGGCGCGTACCCTGGCCGACCTGGACAGTGCCGCGCAT
ATCCACCGCAGCCACCTGGGTGAAGCCTTGCAATACCGCCCCAGCATCAGCGGCGCTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.758

99.198

0.553
  comM Vibrio campbellii strain DS40M4

55.758

99.198

0.553
  comM Glaesserella parasuis strain SC1401

54.108

100

0.541
  comM Haemophilus influenzae Rd KW20

53.479

100

0.539
  comM Legionella pneumophila str. Paris

48.902

100

0.491
  comM Legionella pneumophila strain ERS1305867

48.902

100

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.215

100

0.465

Multiple sequence alignment