Detailed information NTG1002511

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: ABFT82_RS06535
• Genome accession: NZ_CP156749
• Coordinates: 1296833..1299058 (-)
• Length: 741 a.a.
• NCBI ID: WP_347506764.1
• Uniprot ID: -
• Organism: Pseudomonas anguilliseptica strain SICAU PA001 isolate largemouth bass
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1291833..1304058

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABFT82_RS06500 (ABFT82_06500)	murB	1292181..1293215 (-)	1035	WP_090387280.1	UDP-N-acetylmuramate dehydrogenase	-
ABFT82_RS06505 (ABFT82_06505)	-	1293212..1293676 (-)	465	WP_090387282.1	low molecular weight protein-tyrosine-phosphatase	-
ABFT82_RS06510 (ABFT82_06510)	kdsB	1293676..1294440 (-)	765	WP_090387284.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
ABFT82_RS06515 (ABFT82_06515)	-	1294441..1294626 (-)	186	WP_090387286.1	Trm112 family protein	-
ABFT82_RS06520 (ABFT82_06520)	lpxK	1294688..1295689 (-)	1002	WP_347506761.1	tetraacyldisaccharide 4'-kinase	-
ABFT82_RS06525 (ABFT82_06525)	-	1295703..1296131 (-)	429	WP_090248015.1	biopolymer transporter ExbD	-
ABFT82_RS06530 (ABFT82_06530)	exbB	1296128..1296760 (-)	633	WP_347506763.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
ABFT82_RS06535 (ABFT82_06535)	comA	1296833..1299058 (-)	2226	WP_347506764.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
ABFT82_RS06540 (ABFT82_06540)	-	1299193..1299726 (+)	534	WP_090387296.1	DUF2062 domain-containing protein	-
ABFT82_RS06545 (ABFT82_06545)	-	1299778..1301022 (-)	1245	WP_347506766.1	lipoprotein-releasing ABC transporter permease subunit	-
ABFT82_RS06550 (ABFT82_06550)	lolD	1301022..1301705 (-)	684	WP_178124367.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
ABFT82_RS06555 (ABFT82_06555)	-	1301728..1302978 (-)	1251	WP_347506768.1	lipoprotein-releasing ABC transporter permease subunit	-
ABFT82_RS06560 (ABFT82_06560)	-	1303073..1303654 (+)	582	WP_090387303.1	PilZ domain-containing protein	-
ABFT82_RS06565 (ABFT82_06565)	-	1303667..1303969 (+)	303	WP_090387305.1	phosphodiesterase	-

Sequence

Protein

• Length: 741 a.a.
• Molecular weight: 80697.11 Da
• Isoelectric Point: 10.5028

>NTDB_id=1002511 ABFT82_RS06535 WP_347506764.1 1296833..1299058(-) (comA) [Pseudomonas anguilliseptica strain SICAU PA001 isolate largemouth bass]
MRTGVFALVAGLLVLRFLPTLPPFWLLVLLPITGLMLLPFRSYPVALFLFGFTWACVSAQWALDDRLARQLGARTLWLQG
QVVGLPEVGGGVVRFQLEQVASRRDKLPARLRLAWYDGPAVRAGETWRLAVRLKRPHGLVNPQAFDYEAWLLAQRIGATG
TVKSGELIAPASGSGAWRDRLRQQLLAAPAHGREGALAALVLGDDSGLSTADWQVLQNTGTVHLMVISGQHIGLLAALLY
GLVAGLARWGFWPRSWPWLPFACAMAFAGALAYGLLAGFEVPVQRACVMVGLVLLWRWRFRYLGVWLPLLMALLGVLLGE
PLASLQPGFWLSFGAVMLLILIFSGRLGVRPWWSTLLRAQWAMAIGLLPLLLALGLPVSASGPLANLVAVPVVGLLVVPL
ALLGMLLLPLPGVGAALLWIAGWVLDLLFSLLTQLALWLPAWLPSALPFWAWLLVALGALVLLLPAALPMRSLGGLLLLP
LLFSPQQRPEHGLAEVWMLDVGQGLAVLVRTQTHALLYDAGPRFGEFDTGERVVLPSLRALDVRALDLLLISHADNDHAG
GATAIKRGLPVRQVFSGELDKLAPSLQAQACASGQHWQWDGVQFSTWRWASAIDGNQASCVLRIEANGERLWLTGDIDSH
AERALLNSGLVMPAQWLLAPHHGSRSSSSAALLAKVRPTAALISRGAHNAFGHPHAEVVERYRALDARLYDTVEHGAVRI
RLGAFEPAQGLRYRARFWREK

Nucleotide

• Length: 2226 bp

>NTDB_id=1002511 ABFT82_RS06535 WP_347506764.1 1296833..1299058(-) (comA) [Pseudomonas anguilliseptica strain SICAU PA001 isolate largemouth bass]
ATGCGCACAGGGGTTTTCGCGCTGGTGGCCGGGCTGCTGGTGCTGCGCTTTCTTCCGACCTTGCCGCCGTTCTGGCTGCT
GGTTCTTTTGCCGATCACTGGCTTGATGCTGTTGCCGTTTCGCAGTTATCCCGTAGCCTTGTTTCTATTCGGCTTCACTT
GGGCGTGCGTATCGGCGCAGTGGGCGCTGGATGATCGTCTGGCGCGGCAGTTGGGTGCGCGTACCTTGTGGCTGCAAGGG
CAGGTGGTCGGCTTGCCTGAGGTGGGTGGGGGCGTGGTGCGCTTTCAGCTGGAGCAGGTGGCTTCACGTCGCGACAAATT
GCCCGCGCGTCTGCGCCTGGCCTGGTATGACGGGCCGGCCGTGCGTGCGGGCGAGACCTGGCGTCTGGCGGTACGGCTCA
AGCGTCCCCATGGCTTGGTCAATCCTCAGGCATTCGACTACGAAGCCTGGCTGCTGGCGCAGCGCATCGGCGCCACGGGT
ACGGTGAAAAGCGGCGAGCTGATTGCCCCTGCCAGTGGTTCCGGGGCCTGGCGCGACCGCTTGCGTCAGCAGCTCTTGGC
AGCGCCCGCACATGGCCGCGAAGGCGCGCTGGCGGCCCTGGTGTTGGGTGACGATTCGGGGCTTTCGACAGCAGATTGGC
AGGTGCTGCAGAACACCGGCACGGTGCACCTGATGGTGATATCCGGTCAGCATATCGGTCTGTTGGCAGCGCTGTTATAT
GGCCTGGTTGCCGGTTTGGCGCGTTGGGGATTCTGGCCGCGCAGCTGGCCCTGGCTGCCCTTTGCTTGTGCAATGGCATT
TGCCGGCGCCTTGGCTTATGGGTTGTTGGCAGGTTTTGAGGTGCCGGTACAGCGCGCCTGCGTGATGGTCGGTCTGGTGC
TGCTCTGGCGCTGGCGTTTTCGTTACCTGGGTGTGTGGCTGCCTCTGCTAATGGCATTACTTGGGGTGCTGCTGGGTGAA
CCGCTGGCCAGTTTACAGCCTGGCTTCTGGTTGTCCTTTGGCGCGGTGATGCTATTGATCCTGATTTTCAGCGGACGCTT
GGGTGTCAGGCCCTGGTGGAGCACCTTATTGCGCGCACAATGGGCCATGGCCATCGGTTTGTTGCCGTTGCTGCTGGCGC
TCGGTTTACCTGTGAGTGCCAGTGGTCCCTTGGCCAACCTGGTGGCGGTACCCGTGGTTGGGTTATTGGTGGTGCCGCTG
GCATTACTTGGTATGTTATTGCTGCCCTTGCCTGGGGTTGGTGCTGCGCTGCTCTGGATAGCAGGCTGGGTATTGGACTT
GCTGTTTTCTCTGCTGACGCAATTGGCCCTATGGTTGCCGGCTTGGTTACCCAGCGCCTTGCCATTCTGGGCCTGGCTAT
TGGTGGCGCTGGGTGCGCTGGTTTTGCTCCTGCCAGCCGCTTTGCCTATGCGCAGCCTGGGTGGGCTATTGCTGCTGCCC
TTGTTATTCAGCCCACAGCAGCGTCCTGAACACGGGCTAGCCGAGGTGTGGATGCTGGATGTCGGCCAGGGGCTGGCGGT
GCTGGTGCGCACCCAGACACATGCTCTGCTGTATGACGCTGGGCCGCGTTTTGGCGAGTTCGATACCGGTGAGCGCGTGG
TACTGCCTTCTCTGCGGGCGCTGGATGTTCGCGCCCTTGATCTGTTGCTGATCAGTCATGCCGATAACGATCACGCCGGG
GGCGCCACAGCAATCAAGCGCGGTCTGCCTGTCAGGCAGGTGTTCAGTGGCGAGCTGGATAAGCTCGCGCCGTCACTGCA
GGCCCAAGCCTGTGCCAGTGGTCAGCACTGGCAGTGGGATGGCGTGCAATTCAGTACCTGGCGTTGGGCGAGTGCGATTG
ATGGCAACCAGGCGTCCTGCGTGCTGCGCATCGAGGCCAATGGCGAGCGGCTGTGGCTAACTGGTGATATCGACAGCCAC
GCTGAGCGTGCCTTGCTTAACAGCGGTCTGGTAATGCCGGCGCAGTGGCTGCTGGCACCGCACCATGGCAGTCGCAGTTC
ATCCTCGGCGGCCTTGCTGGCAAAGGTCAGGCCTACAGCTGCGCTGATTTCCCGTGGTGCGCACAATGCCTTTGGTCATC
CGCATGCCGAAGTTGTCGAGCGTTACCGGGCATTGGATGCGCGGCTGTACGACACCGTCGAACACGGCGCGGTACGGATT
CGTTTGGGTGCATTCGAGCCTGCGCAGGGTTTGCGCTATCGAGCACGTTTTTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (22-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (500-685)

• Competence protein (Competence) (200-465)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	67.406	97.301	0.656
comA	Ralstonia pseudosolanacearum GMI1000	34.04	100	0.39
comA	Neisseria gonorrhoeae MS11	35.079	100	0.362