Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ABFT82_RS06530 Genome accession   NZ_CP156749
Coordinates   1296128..1296760 (-) Length   210 a.a.
NCBI ID   WP_347506763.1    Uniprot ID   -
Organism   Pseudomonas anguilliseptica strain SICAU PA001 isolate largemouth bass     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1291128..1301760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFT82_RS06500 (ABFT82_06500) murB 1292181..1293215 (-) 1035 WP_090387280.1 UDP-N-acetylmuramate dehydrogenase -
  ABFT82_RS06505 (ABFT82_06505) - 1293212..1293676 (-) 465 WP_090387282.1 low molecular weight protein-tyrosine-phosphatase -
  ABFT82_RS06510 (ABFT82_06510) kdsB 1293676..1294440 (-) 765 WP_090387284.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ABFT82_RS06515 (ABFT82_06515) - 1294441..1294626 (-) 186 WP_090387286.1 Trm112 family protein -
  ABFT82_RS06520 (ABFT82_06520) lpxK 1294688..1295689 (-) 1002 WP_347506761.1 tetraacyldisaccharide 4'-kinase -
  ABFT82_RS06525 (ABFT82_06525) - 1295703..1296131 (-) 429 WP_090248015.1 biopolymer transporter ExbD -
  ABFT82_RS06530 (ABFT82_06530) exbB 1296128..1296760 (-) 633 WP_347506763.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ABFT82_RS06535 (ABFT82_06535) comA 1296833..1299058 (-) 2226 WP_347506764.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABFT82_RS06540 (ABFT82_06540) - 1299193..1299726 (+) 534 WP_090387296.1 DUF2062 domain-containing protein -
  ABFT82_RS06545 (ABFT82_06545) - 1299778..1301022 (-) 1245 WP_347506766.1 lipoprotein-releasing ABC transporter permease subunit -
  ABFT82_RS06550 (ABFT82_06550) lolD 1301022..1301705 (-) 684 WP_178124367.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22779.03 Da        Isoelectric Point: 9.6034

>NTDB_id=1002510 ABFT82_RS06530 WP_347506763.1 1296128..1296760(-) (exbB) [Pseudomonas anguilliseptica strain SICAU PA001 isolate largemouth bass]
MWELVKAGGWMMLPIILCSIAAAGIIAERLWALRPSRITPPNLLGQVWKWIKDKKLNNQKLKELRANSPLGQILAAGLAN
SKHGREIMKECIQEAAARVIHDLERYLNALGTIAGIAPLLGLLGTVLGMIEIFSSFMGSGMANASLLAGGISKALITTAA
GLMVAIPALFFHRYLQRRVDELVVGMAQEAIRLVEVVQGDRDVDMGEDKA

Nucleotide


Download         Length: 633 bp        

>NTDB_id=1002510 ABFT82_RS06530 WP_347506763.1 1296128..1296760(-) (exbB) [Pseudomonas anguilliseptica strain SICAU PA001 isolate largemouth bass]
GTGTGGGAACTGGTTAAAGCTGGCGGCTGGATGATGCTGCCGATCATTCTGTGTTCTATCGCTGCGGCCGGCATCATTGC
CGAACGCTTGTGGGCGCTGCGGCCGAGCCGCATTACGCCACCCAACCTGCTCGGTCAGGTATGGAAGTGGATCAAGGATA
AAAAACTCAATAACCAGAAGCTCAAGGAGCTGCGCGCCAACTCGCCGTTGGGGCAGATCCTCGCCGCTGGTCTGGCCAAC
TCCAAACATGGTCGTGAGATCATGAAAGAGTGCATCCAGGAAGCCGCCGCGCGGGTGATTCACGACCTGGAGCGCTACCT
GAATGCCCTGGGCACCATTGCCGGCATTGCGCCACTGCTGGGTTTGCTCGGTACGGTGCTTGGCATGATCGAAATCTTCA
GCTCCTTTATGGGCTCGGGCATGGCTAATGCGTCCTTGCTCGCCGGCGGTATTTCCAAGGCGCTGATCACTACGGCGGCG
GGTTTGATGGTGGCCATTCCGGCACTGTTCTTCCACCGTTACCTGCAACGCCGCGTCGATGAGTTGGTGGTCGGTATGGC
GCAGGAGGCAATTCGCCTGGTAGAAGTGGTGCAGGGCGACCGTGACGTCGACATGGGCGAGGACAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

89.524

100

0.895

Multiple sequence alignment