Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   CV024_RS03480 Genome accession   NZ_CP156745
Coordinates   724309..725178 (-) Length   289 a.a.
NCBI ID   WP_047459100.1    Uniprot ID   -
Organism   Vibrio fluvialis strain QY27     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 719309..730178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV024_RS03460 (CV024_03460) - 721432..722638 (+) 1207 Protein_635 IS3 family transposase -
  CV024_RS03465 (CV024_03465) yacG 722673..722870 (-) 198 WP_020332195.1 DNA gyrase inhibitor YacG -
  CV024_RS03470 (CV024_03470) zapD 722925..723665 (-) 741 WP_100268242.1 cell division protein ZapD -
  CV024_RS03475 (CV024_03475) coaE 723698..724306 (-) 609 WP_061056140.1 dephospho-CoA kinase -
  CV024_RS03480 (CV024_03480) pilD 724309..725178 (-) 870 WP_047459100.1 A24 family peptidase Machinery gene
  CV024_RS03485 (CV024_03485) pilC 725230..726456 (-) 1227 WP_020332199.1 type II secretion system F family protein Machinery gene
  CV024_RS03490 (CV024_03490) pilB 726492..728180 (-) 1689 WP_100268243.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CV024_RS03495 (CV024_03495) pilA 728190..728609 (-) 420 WP_047459095.1 pilin Machinery gene
  CV024_RS03500 (CV024_03500) nadC 728841..729728 (-) 888 WP_061056143.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 32258.31 Da        Isoelectric Point: 6.4655

>NTDB_id=1002450 CV024_RS03480 WP_047459100.1 724309..725178(-) (pilD) [Vibrio fluvialis strain QY27]
MDIFNFYPWLFPTLATVLGLIIGSFLNVVIYRLPKIMEREWRQECAESFPEYHIEPPQGILTLSTPRSTCPHCDTPIRVI
DNIPVLSWLLLRGKCSNCQGPISARYPLIELLTASCSLLIALQFGFSWFAVAMLFFTYTLIAATFIDFDTMLLPDQLTLP
LLWAGIALALAGISPISLQDAVIGAIAGYLSLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPIIILMSSLVGL
VFGLIQLRLQKRGIDKAFPFGPYLAIAGWLSLLFGHDIAGWYFHSVLGF

Nucleotide


Download         Length: 870 bp        

>NTDB_id=1002450 CV024_RS03480 WP_047459100.1 724309..725178(-) (pilD) [Vibrio fluvialis strain QY27]
ATGGACATTTTTAATTTTTACCCCTGGCTGTTTCCTACGCTGGCGACAGTGCTGGGGTTAATTATCGGCAGTTTCCTCAA
TGTGGTGATTTATCGCCTGCCGAAAATCATGGAGCGCGAGTGGCGTCAGGAGTGTGCGGAATCCTTTCCCGAGTATCATA
TTGAGCCGCCTCAGGGCATTTTAACGCTGAGTACGCCACGTTCCACCTGCCCGCATTGCGATACGCCGATCCGGGTTATC
GACAACATTCCGGTACTGAGCTGGCTGTTGCTGCGTGGTAAATGCTCGAATTGTCAGGGCCCTATCAGCGCGCGTTATCC
ACTGATTGAACTGCTGACGGCTTCATGCAGCCTCTTGATTGCGCTGCAATTTGGTTTTAGCTGGTTTGCCGTTGCCATGC
TGTTCTTTACCTATACACTGATTGCGGCAACCTTCATTGATTTCGATACGATGCTGCTGCCGGATCAGCTTACTCTGCCC
CTACTCTGGGCTGGTATTGCGCTGGCGTTGGCGGGCATCAGCCCGATTTCGCTACAAGATGCGGTGATTGGTGCGATAGC
GGGTTATCTGTCGTTATGGTCGGTGTACTGGCTGTTTAAGCTACTGACAGGCAAAGAAGGCATGGGCTATGGCGACTTTA
AGCTATTAGCGGCTCTCGGTGCCTGGCTGGGATGGCAGCAACTACCGATCATCATTCTGATGTCATCTCTGGTTGGACTG
GTGTTCGGCCTCATTCAACTGCGTCTGCAAAAGCGCGGCATTGATAAAGCATTTCCCTTCGGGCCTTATCTGGCGATTGC
AGGCTGGCTGTCCCTGCTGTTTGGTCATGACATTGCGGGTTGGTATTTTCATTCGGTATTAGGATTCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(135-244)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

78.819

99.654

0.785
  pilD Vibrio campbellii strain DS40M4

78.125

99.654

0.779
  pilD Acinetobacter baumannii D1279779

53.285

94.81

0.505
  pilD Acinetobacter nosocomialis M2

52.92

94.81

0.502
  pilD Neisseria gonorrhoeae MS11

50.929

93.08

0.474

Multiple sequence alignment