Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CV024_RS00920 Genome accession   NZ_CP156745
Coordinates   194421..195944 (-) Length   507 a.a.
NCBI ID   WP_100268758.1    Uniprot ID   -
Organism   Vibrio fluvialis strain QY27     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 189421..200944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV024_RS00895 (CV024_00895) - 189770..190036 (+) 267 WP_020332578.1 DUF1040 family protein -
  CV024_RS00900 (CV024_00900) ccoG 190298..191722 (+) 1425 WP_100268756.1 cytochrome c oxidase accessory protein CcoG -
  CV024_RS00905 (CV024_00905) - 191767..192753 (+) 987 WP_024374485.1 serine/threonine protein kinase -
  CV024_RS00910 (CV024_00910) - 192784..193383 (+) 600 WP_024374484.1 thiol:disulfide interchange protein DsbA/DsbL -
  CV024_RS00915 (CV024_00915) - 193424..194317 (-) 894 WP_100268757.1 acyltransferase -
  CV024_RS00920 (CV024_00920) comM 194421..195944 (-) 1524 WP_100268758.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CV024_RS00925 (CV024_00925) ilvG 196428..198074 (+) 1647 WP_100268759.1 acetolactate synthase 2 catalytic subunit -
  CV024_RS00930 (CV024_00930) ilvM 198086..198370 (+) 285 WP_014204160.1 acetolactate synthase 2 small subunit -
  CV024_RS00935 (CV024_00935) ilvE 198382..199323 (+) 942 WP_020332585.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55106.10 Da        Isoelectric Point: 8.5030

>NTDB_id=1002438 CV024_RS00920 WP_100268758.1 194421..195944(-) (comM) [Vibrio fluvialis strain QY27]
MGLAIIHSRASIGVQAPAVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSKFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASDQIARTQLSDHEFIGELALSGEIRSVKGVLPAALAANQARRSLVVPHFNGDQAALVGKEQHKSARTL
LEVCADLCGQQTLSLFQSDARDASVPRERDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMTE
AEAMETASVASLTQQEINQHNWKQRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARVNPQGILRYLSRLSGPLLDRFDMSIEIPALPKGTLSHGGER
GEPTAVVQARVFRARETMLARSGKVNALLQSREIETYCPLSQPDAEFLENALHRLGLSIRAYHRIIKVARTIADLSGEAH
IQRAHLAEALGYRAMDRLLKQLTAQSV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=1002438 CV024_RS00920 WP_100268758.1 194421..195944(-) (comM) [Vibrio fluvialis strain QY27]
ATGGGGCTTGCTATCATTCATAGCCGTGCCAGCATCGGTGTTCAGGCACCAGCGGTGACGGTGGAAGTACACATCAGTAA
CGGTATGCCGGGGTTTACGCTGGTTGGTTTGCCGGAGACAACCGTCAAAGAATCCCGCGATCGCGTGCGCAGCGCCATCA
TCAATTCCAAGTTTGAATTTCCCGCCAAACGCATTACCGTCAATTTAGCGCCCGCTGATCTGCCCAAAGAGGGCGGCCGT
TTTGATTTGCCGATCGCGCTCGGCATTCTGGCTGCCTCGGATCAGATTGCCCGCACCCAATTGAGCGACCACGAATTCAT
CGGTGAGTTGGCGCTGTCGGGGGAAATTCGCAGCGTGAAAGGCGTGCTGCCCGCAGCCTTGGCGGCCAATCAGGCGCGGC
GCAGTTTGGTGGTGCCCCATTTCAATGGCGATCAGGCGGCGCTGGTGGGGAAAGAGCAACATAAATCGGCGCGCACTCTG
CTTGAAGTGTGTGCCGATCTGTGTGGTCAACAGACGTTATCGCTGTTTCAAAGTGACGCGCGCGACGCCAGCGTACCGCG
TGAGCGCGACTTGCAGGACATCATTGGTCAGCAGCAAGGCAAGCGGGCGTTGGAGATAGCAGCGGCGGGCAACCACAATC
TGCTGTTTCTCGGCCCGCCGGGCACGGGTAAAACTATGTTGGCCTCGCGTCTGTGCGATCTGCTGCCAGAGATGACTGAG
GCCGAGGCGATGGAGACTGCATCAGTGGCCTCGCTGACGCAGCAGGAAATCAACCAGCACAACTGGAAACAGCGTCCGTT
TCGCGCGCCGCATCATTCCAGCTCCATGGCTGCACTGGTAGGTGGCGGCACTATTCCCCGCCCCGGAGAAATCTCACTTG
CTCACAATGGCCTACTATTTCTGGATGAAATGCCGGAGTTTGAACGCAAAGTGCTCGATTCACTGCGCGAGCCGCTGGAG
TCCGGCGAGATTATTATTTCCCGCGCGCAGGGTAAAACCCGTTTCCCAGCGCGTTTTCAGTTGGTTGGCGCGCTCAATCC
CAGTCCGACGGGGTATTACGAAGGCAATCAGGCGCGGGTGAATCCGCAGGGGATTTTACGCTATTTGAGCCGTTTGTCGG
GGCCGCTGCTGGATCGCTTTGATATGTCGATTGAAATTCCGGCATTGCCCAAAGGCACTTTGTCGCACGGCGGCGAACGC
GGCGAGCCGACGGCGGTGGTGCAGGCGCGGGTCTTTCGCGCACGTGAAACCATGCTGGCACGCAGTGGCAAAGTGAATGC
GCTGCTGCAAAGCCGTGAAATCGAAACTTATTGCCCGCTCAGTCAGCCGGATGCGGAATTTCTGGAAAATGCGCTGCACC
GCCTGGGGTTGTCAATCCGGGCCTATCACCGCATCATCAAAGTCGCGCGCACCATTGCCGATTTGAGCGGTGAGGCACAC
ATTCAACGGGCGCATCTGGCCGAAGCGCTCGGGTATCGCGCTATGGACCGGTTACTCAAACAGCTCACCGCCCAATCGGT
CTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

89.152

100

0.892
  comM Vibrio campbellii strain DS40M4

84.813

100

0.848
  comM Haemophilus influenzae Rd KW20

66.075

100

0.661
  comM Glaesserella parasuis strain SC1401

64.118

100

0.645
  comM Legionella pneumophila str. Paris

49.798

97.83

0.487
  comM Legionella pneumophila strain ERS1305867

49.798

97.83

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.885

99.803

0.428

Multiple sequence alignment