Detailed information NTG1002250

Bioinformatically predicted

Overview

• Name: ciaR
• Type: Regulator
• Locus tag: EL327_RS26405
• Genome accession: NZ_LR134342
• Coordinates: 5466340..5467011 (+)
• Length: 223 a.a.
• NCBI ID: WP_003090494.1
• Uniprot ID: A0A0H2ZC88
• Organism: Pseudomonas aeruginosa strain NCTC10728
• Function: repress competence development (predicted from homology) Competence regulation

Genomic Context

Location: 5461340..5472011

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL327_RS26370 (NCTC10728_05168)	ppyR	5461813..5462070 (+)	258	WP_003090502.1	psl/pyoverdine operon transcriptional regulator PpyR	-
EL327_RS26375 (NCTC10728_05169)	-	5462057..5463250 (+)	1194	WP_003122598.1	NnrS family protein	-
EL327_RS26380 (NCTC10728_05170)	-	5463251..5463517 (-)	267	WP_003115326.1	DUF5329 domain-containing protein	-
EL327_RS26385 (NCTC10728_05171)	-	5463501..5464394 (-)	894	WP_003116712.1	hypothetical protein	-
EL327_RS26390 (NCTC10728_05172)	-	5464421..5465503 (-)	1083	WP_034025286.1	hypothetical protein	-
EL327_RS26395 (NCTC10728_05173)	-	5465718..5466026 (+)	309	WP_003090497.1	PepSY domain-containing protein	-
EL327_RS26400 (NCTC10728_05174)	-	5466026..5466340 (+)	315	WP_003097704.1	PepSY domain-containing protein	-
EL327_RS26405 (NCTC10728_05175)	ciaR	5466340..5467011 (+)	672	WP_003090494.1	two-component system response regulator CarR	Regulator
EL327_RS26410 (NCTC10728_05176)	carS	5467008..5468345 (+)	1338	WP_003090493.1	two-component system sensor histidine kinase CarS	-
EL327_RS26415 (NCTC10728_05177)	-	5468436..5468744 (+)	309	WP_003097699.1	hypothetical protein	-
EL327_RS26420 (NCTC10728_05178)	-	5468749..5470893 (-)	2145	WP_034025283.1	methyl-accepting chemotaxis protein	-

Sequence

Protein

• Length: 223 a.a.
• Molecular weight: 24729.20 Da
• Isoelectric Point: 5.8445

>NTDB_id=1002250 EL327_RS26405 WP_003090494.1 5466340..5467011(+) (ciaR) [Pseudomonas aeruginosa strain NCTC10728]
MRLLLVEDHVPLADELMASLTRQGYAVDWLADGRDAAVQGASEPYDLIILDLGLPGRPGLEILQEWRGLGLATPVLILTA
RGSWAERIDGLKAGADDYLTKPFHPEELALRIQALLRRAHGLANQSQLEAAGLRLDEQRQCVCLNGADVDLTAAEFRLLR
YFMLHPGQVLSKGHLAEHLYDGETERDSNVIEVHVNHLRRKLGREVIETRRGQGYRYAGVAAG

Nucleotide

• Length: 672 bp

>NTDB_id=1002250 EL327_RS26405 WP_003090494.1 5466340..5467011(+) (ciaR) [Pseudomonas aeruginosa strain NCTC10728]
ATGCGGTTGCTGCTGGTTGAGGATCACGTTCCCCTGGCCGACGAACTGATGGCCAGCCTGACCCGCCAGGGCTACGCGGT
GGACTGGCTGGCCGACGGCCGCGACGCGGCGGTGCAGGGCGCCAGCGAGCCCTACGACCTGATCATCCTCGACCTCGGCC
TGCCCGGGCGCCCCGGCCTGGAGATACTCCAGGAGTGGCGTGGGCTGGGACTCGCGACTCCGGTGCTGATCCTCACCGCG
CGCGGTTCCTGGGCCGAACGCATCGATGGGCTCAAGGCCGGTGCCGACGACTATCTGACCAAGCCGTTCCATCCGGAAGA
GTTGGCCTTGCGCATCCAGGCCCTGTTGCGCCGCGCCCATGGGCTGGCCAACCAGAGCCAGCTGGAGGCCGCCGGGCTGC
GCCTGGACGAGCAGCGTCAGTGCGTGTGCCTGAACGGCGCCGACGTCGACCTGACCGCCGCCGAATTCCGCCTGCTGCGC
TATTTCATGCTGCACCCCGGCCAGGTCCTGTCCAAGGGGCACCTGGCCGAGCATCTGTACGACGGCGAGACCGAACGCGA
TTCCAACGTCATCGAGGTCCACGTCAACCACCTGCGGCGCAAGCTCGGCCGCGAGGTGATCGAGACCCGCCGTGGCCAGG
GCTACCGCTACGCCGGGGTGGCCGCCGGATGA

Domains

Predicted by InterProScan.

• Response regulator receiver domain (Response_reg) (4-112)

• Transcriptional regulatory protein, C terminal (Trans_reg_C) (147-216)

3D structure

• AlphaFold DB: A0A0H2ZC88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ciaR	Streptococcus mutans UA159	37.727	98.655	0.372
ciaR	Streptococcus pneumoniae Rx1	37.273	98.655	0.368
ciaR	Streptococcus pneumoniae D39	37.273	98.655	0.368
ciaR	Streptococcus pneumoniae R6	37.273	98.655	0.368
ciaR	Streptococcus pneumoniae TIGR4	37.273	98.655	0.368
micA	Streptococcus pneumoniae Cp1015	35.683	100	0.363
vicR	Streptococcus mutans UA159	35.526	100	0.363