Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABFO07_RS04125 Genome accession   NZ_CP156685
Coordinates   870410..871966 (-) Length   518 a.a.
NCBI ID   WP_347468396.1    Uniprot ID   -
Organism   Burkholderia stagnalis strain YJ-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 865410..876966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFO07_RS04110 - 867356..868711 (+) 1356 WP_059566489.1 sigma-54 dependent transcriptional regulator -
  ABFO07_RS04115 - 868833..869369 (-) 537 WP_059566490.1 TlpA disulfide reductase family protein -
  ABFO07_RS04120 - 869532..870104 (+) 573 WP_059885361.1 hypothetical protein -
  ABFO07_RS04125 comM 870410..871966 (-) 1557 WP_347468396.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABFO07_RS04130 - 872194..872445 (-) 252 WP_006398174.1 accessory factor UbiK family protein -
  ABFO07_RS04135 - 872799..873137 (+) 339 WP_006398175.1 P-II family nitrogen regulator -
  ABFO07_RS04140 - 873170..874681 (+) 1512 WP_059885272.1 ammonium transporter -
  ABFO07_RS04145 gshA 874924..876213 (+) 1290 WP_059566493.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 518 a.a.        Molecular weight: 54525.47 Da        Isoelectric Point: 7.6382

>NTDB_id=1002206 ABFO07_RS04125 WP_347468396.1 870410..871966(-) (comM) [Burkholderia stagnalis strain YJ-2]
MSLAVVRSRAPAAGRAPDVTVEVHLANGLPSFSIVGLPDLEVRESRERVRAALQNCGFEFPVRRITVNLAPADLPKESGR
FDLPIALGILAANGQIPADALLGREFAGELSLTGALRPMRGAFAMACGVARDGCAAPADRAAPPREPELYLPLDSAAEAA
LVPGVTVYGAADLPALCAHLAGAPDGRLAPVAAPPLDGRPATAAPDLADVIGQRGARRALEVAAAGGHHMLMVGPPGAGK
SMLAARLPGLLPPLTDDEALTSAALLSASRIGFSPAQWRQRPFRSPHHSSSAAALVGGRNPPQPGEITLAHLGVLFLDEL
PEFDRHVLEMLREPLEAGRITISRAAQQADFPAACQLIAAMNPCPCGWHGDPSGRCRCSPDVAARYLRKLSGPLLDRIDI
QIDLPALTPAELAARAPTPGEPSAAVATRVAQARARQLERQGKTNHMLSGRETDDLGRPTDDGERLLREAGERFGWSARA
YYRVLKVARTIADLAGDPQPNAAQIAEAIRYRRALTAL

Nucleotide


Download         Length: 1557 bp        

>NTDB_id=1002206 ABFO07_RS04125 WP_347468396.1 870410..871966(-) (comM) [Burkholderia stagnalis strain YJ-2]
ATGTCGCTTGCCGTGGTGCGCAGCCGCGCACCGGCGGCCGGCCGCGCGCCGGACGTCACCGTCGAAGTCCATCTCGCCAA
CGGCCTGCCGTCGTTCTCGATCGTCGGCCTGCCCGATCTCGAAGTCCGTGAAAGCCGCGAGCGCGTGCGCGCCGCGCTGC
AGAACTGCGGCTTCGAATTCCCCGTGCGCCGCATCACCGTCAATCTCGCGCCCGCCGACCTGCCGAAGGAATCGGGCCGC
TTCGACCTGCCGATCGCGCTCGGCATCCTCGCCGCGAACGGCCAGATTCCGGCCGACGCGCTGCTGGGCCGCGAATTCGC
CGGCGAGTTGTCGCTCACCGGCGCGCTGCGGCCGATGCGCGGCGCGTTCGCGATGGCCTGCGGCGTCGCGCGCGACGGGT
GCGCGGCCCCCGCCGATCGGGCGGCGCCTCCCCGTGAGCCGGAGCTGTACCTGCCGCTCGACAGCGCCGCCGAGGCGGCG
CTCGTGCCGGGCGTGACCGTGTACGGCGCGGCCGACCTGCCCGCGCTGTGCGCGCACCTGGCCGGTGCGCCCGACGGCCG
GCTCGCGCCCGTCGCCGCGCCGCCGCTCGATGGCCGGCCCGCGACGGCCGCGCCCGATCTCGCCGACGTGATCGGCCAGC
GCGGCGCACGGCGCGCGCTCGAAGTCGCGGCGGCCGGCGGGCATCACATGCTGATGGTCGGGCCGCCCGGCGCGGGCAAG
TCGATGCTGGCCGCGCGGCTGCCGGGGCTGCTGCCGCCGCTCACCGACGACGAGGCGCTGACGTCGGCCGCGCTGCTGTC
CGCAAGCCGCATCGGCTTCTCGCCCGCGCAGTGGCGGCAGCGGCCGTTTCGCTCGCCGCATCATTCGTCGAGCGCGGCGG
CGCTGGTCGGCGGCCGCAACCCGCCGCAGCCGGGCGAGATCACGCTCGCGCACCTGGGCGTGCTGTTCCTCGACGAGCTG
CCGGAATTCGACCGGCACGTGCTGGAAATGCTGCGCGAGCCGCTCGAGGCCGGCCGCATCACGATCTCGCGCGCCGCCCA
GCAGGCGGACTTCCCCGCCGCGTGCCAGCTGATCGCCGCGATGAACCCGTGCCCGTGCGGCTGGCACGGCGATCCGTCCG
GCCGCTGCCGCTGCTCGCCGGACGTCGCCGCGCGCTACCTGCGCAAGCTGTCCGGGCCGCTGCTCGACCGCATCGACATC
CAGATCGACCTGCCCGCGCTCACGCCGGCCGAGCTGGCGGCGCGCGCGCCGACACCCGGCGAGCCGAGCGCCGCGGTCGC
CACGCGGGTCGCGCAGGCCCGCGCGCGGCAGCTCGAACGCCAGGGCAAGACGAATCACATGCTGAGCGGCCGCGAAACCG
ACGACCTCGGCCGGCCGACCGACGACGGCGAGCGCCTGCTGCGCGAGGCCGGCGAGCGCTTCGGCTGGTCGGCGCGCGCG
TATTACCGGGTGCTGAAGGTCGCGCGGACGATCGCCGATCTCGCCGGCGACCCGCAGCCGAACGCCGCGCAGATCGCCGA
GGCGATCCGCTACCGGCGCGCGCTGACCGCGCTCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-134)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(420-512)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(206-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

49.023

98.842

0.485
  comM Vibrio campbellii strain DS40M4

48.438

98.842

0.479
  comM Haemophilus influenzae Rd KW20

47.868

99.614

0.477
  comM Glaesserella parasuis strain SC1401

47.953

99.035

0.475
  comM Legionella pneumophila str. Paris

45.825

99.421

0.456
  comM Legionella pneumophila strain ERS1305867

45.825

99.421

0.456
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.376

97.49

0.413

Multiple sequence alignment