Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABFU05_RS19170 Genome accession   NZ_CP156015
Coordinates   4440280..4441800 (+) Length   506 a.a.
NCBI ID   WP_011038949.1    Uniprot ID   Q8P442
Organism   Xanthomonas campestris pv. raphani strain 0576     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4435280..4446800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU05_RS19145 (ABFU05_19130) speE 4436230..4437087 (+) 858 WP_011038944.1 polyamine aminopropyltransferase -
  ABFU05_RS19150 (ABFU05_19135) - 4437202..4437984 (-) 783 WP_407467044.1 hypothetical protein -
  ABFU05_RS19155 (ABFU05_19140) - 4438513..4439172 (+) 660 WP_014506282.1 RIO1 family regulatory kinase/ATPase -
  ABFU05_RS19160 (ABFU05_19145) - 4439463..4439837 (-) 375 WP_029217016.1 P-II family nitrogen regulator -
  ABFU05_RS19165 (ABFU05_19150) ubiK 4439992..4440264 (+) 273 WP_011038948.1 ubiquinone biosynthesis accessory factor UbiK -
  ABFU05_RS19170 (ABFU05_19155) comM 4440280..4441800 (+) 1521 WP_011038949.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABFU05_RS19175 (ABFU05_19160) - 4442158..4442667 (+) 510 WP_042595605.1 lipocalin family protein -
  ABFU05_RS19180 (ABFU05_19165) - 4442678..4442854 (-) 177 WP_012439469.1 hypothetical protein -
  ABFU05_RS19185 (ABFU05_19170) - 4443236..4444795 (+) 1560 WP_274298814.1 EAL domain-containing protein -
  ABFU05_RS19190 (ABFU05_19175) - 4445280..4445450 (-) 171 WP_225043332.1 hypothetical protein -
  ABFU05_RS19195 (ABFU05_19180) - 4445464..4446585 (-) 1122 WP_274298815.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53909.63 Da        Isoelectric Point: 8.3405

>NTDB_id=1001232 ABFU05_RS19170 WP_011038949.1 4440280..4441800(+) (comM) [Xanthomonas campestris pv. raphani strain 0576]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKDGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGIDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVQAFTARTL
LEVCAALNGTQPPPPAELAIVALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPSLLPDASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTISRAARSMDFPARFQLVAAMNPCPCGWAGDASGRCRCSGDAIRRYRSRISGPLLDRIDLHVDVPRLPPQALRSGA
TGEDSASVRARVAAARERQQVRAQVPNARLDQAATDRHCRLGNDDQLLLERAIEHLQLSARSMHRILRVSRTIADLDDSA
DIATRHLTEAIGYRKLDRALDTSSAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1001232 ABFU05_RS19170 WP_011038949.1 4440280..4441800(+) (comM) [Xanthomonas campestris pv. raphani strain 0576]
ATGAGTCTAGCGCTGGTGCACAGCCGTGCCCGCGTGGGAGTGCACGCGCCTGAAGTCCGGGTGGAAGTGCATCTCTCCGG
CGGCCTGCCTTCCACCCAGATCGTGGGCCTGCCCGAGGCCGCGGTGCGCGAGTCACGCGAACGGGTCCGTGCCGCCTTGC
TGTGCGCACAGTTCGAATTCCCCGCACGCCGCATCACCATCAACCTGGCACCGGCGGATCTACCCAAGGACGGCGGGCGC
TTCGACCTGCCGATCGCGCTCGGCATCCTTGCAGCCAGCGGGCAGATCGACCGCCAGGCCCTGGCCGACTACGAATTCCT
CGGCGAGCTGGCCCTCACCGGCGAGCTGCGCGGCATCGATGGGGTGCTGCCTGCGGCCCTGGCCGCCGCGCAGGCCGGGC
GGCGCCTGATCGTGCCGCTGGCCAACGGCGCCGAGGCGGCCATCGCCGGACACGTGCAGGCCTTTACCGCGCGCACTTTG
CTGGAAGTGTGCGCCGCACTCAACGGCACCCAGCCGCCACCGCCCGCCGAACTAGCCATCGTCGCACTCGGCGCCCGCGC
GCTACCGGACATGGCCGACGTGCGCGGGCAGCCGCATGCGCGCCGCGCCCTGGAGATCGCCGCGGCCGGCGGCCATCACC
TGCTGCTGGTCGGCAGCCCTGGCTGCGGCAAGACCTTGCTGGCCTCGCGCCTGCCCAGTCTGTTGCCGGACGCCAGCGAG
GCCGAGGCGCTGGAAACCGCCGCCATCACCTCCATCAGCGGACGCGGCCTGGACCTGGCGCGCTGGCGGCAACGCCCTTA
TCGCGCACCGCACCACACCGCCAGCGCGGTGGCGCTGGTGGGCGGCGGCACCCATCCGCGCCCGGGCGAGATCTCATTGG
CGCACAACGGGGTGCTGTTCCTGGACGAGCTACCCGAATGGCAGCGGCAGACCCTGGAAGTGCTGCGCGAGCCACTGGAG
TCCGGCGTGGTCACCATCTCGCGGGCTGCGCGCAGCATGGACTTCCCGGCGCGGTTCCAACTGGTCGCCGCAATGAACCC
CTGCCCGTGCGGCTGGGCCGGCGATGCCAGCGGGCGATGCCGCTGCAGTGGTGACGCCATCCGCCGGTATCGCAGCCGCA
TCTCCGGGCCGCTGCTGGATCGCATCGACCTGCACGTCGACGTGCCGCGCCTGCCGCCGCAGGCACTGCGCAGCGGTGCG
ACCGGCGAGGACAGTGCCAGCGTGCGTGCACGCGTTGCTGCTGCACGCGAACGCCAGCAGGTACGTGCGCAGGTGCCCAA
TGCCCGGCTGGACCAGGCCGCCACCGACCGCCACTGCCGGTTGGGCAATGACGATCAGCTGCTGCTGGAACGCGCCATCG
AACACCTGCAACTGTCCGCGCGCTCGATGCATCGCATCCTGCGCGTTTCGCGCACCATCGCCGATCTCGACGATAGCGCC
GACATCGCCACCCGTCACCTCACCGAAGCCATCGGCTACCGCAAACTCGACCGCGCCCTCGATACCTCCAGCGCCGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8P442

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.138

100

0.551
  comM Haemophilus influenzae Rd KW20

54.118

100

0.545
  comM Vibrio campbellii strain DS40M4

53.516

100

0.542
  comM Glaesserella parasuis strain SC1401

53.953

100

0.54
  comM Legionella pneumophila str. Paris

52.988

99.209

0.526
  comM Legionella pneumophila strain ERS1305867

52.988

99.209

0.526
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.047

100

0.46

Multiple sequence alignment