Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABFU23_RS19460 Genome accession   NZ_CP156014
Coordinates   4473406..4474926 (+) Length   506 a.a.
NCBI ID   WP_076057121.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. raphani strain 0719     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4468406..4479926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU23_RS19435 (ABFU23_19395) speE 4469351..4470208 (+) 858 WP_076057119.1 polyamine aminopropyltransferase -
  ABFU23_RS19440 (ABFU23_19400) - 4470323..4471105 (-) 783 WP_407464791.1 hypothetical protein -
  ABFU23_RS19445 (ABFU23_19405) - 4471634..4472293 (+) 660 WP_014506282.1 RIO1 family regulatory kinase/ATPase -
  ABFU23_RS19450 (ABFU23_19410) - 4472589..4472927 (-) 339 WP_042595602.1 P-II family nitrogen regulator -
  ABFU23_RS19455 (ABFU23_19415) ubiK 4473118..4473390 (+) 273 WP_040941985.1 ubiquinone biosynthesis accessory factor UbiK -
  ABFU23_RS19460 (ABFU23_19420) comM 4473406..4474926 (+) 1521 WP_076057121.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABFU23_RS19465 (ABFU23_19425) - 4475284..4475793 (+) 510 WP_192886228.1 lipocalin family protein -
  ABFU23_RS19470 (ABFU23_19430) - 4475804..4475980 (-) 177 WP_012439469.1 hypothetical protein -
  ABFU23_RS19475 (ABFU23_19435) - 4476362..4477921 (+) 1560 WP_012439470.1 EAL domain-containing protein -
  ABFU23_RS19480 (ABFU23_19440) - 4478255..4479376 (-) 1122 WP_042595610.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53811.49 Da        Isoelectric Point: 8.3405

>NTDB_id=1001214 ABFU23_RS19460 WP_076057121.1 4473406..4474926(+) (comM) [Xanthomonas campestris pv. raphani strain 0719]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKDGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGIDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVQAFTARTL
LEVCAALNGTQPPPAAELAIVALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPSLLPDASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTISRAARSMDFPARFQLVAAMNPCPCGWAGDASGRCRCSGDAIRRYRGRISGPLLDRIDLHVDVPRLPPQALRSGA
TGEDSASVRARVAAARDRQQARAQVPNARLDQAATDRHCRLGNDDQLLLERAIEHLQLSARSMHRILRVSRTIADLDDSA
DIATRHLTEAIGYRKLDRALDTSSAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1001214 ABFU23_RS19460 WP_076057121.1 4473406..4474926(+) (comM) [Xanthomonas campestris pv. raphani strain 0719]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGAGTGCACGCGCCTGAAGTCCGGGTGGAAGTGCATCTCTCCGG
CGGCCTGCCTTCCACCCAGATCGTGGGCCTGCCCGAGGCCGCGGTGCGCGAGTCACGCGAACGGGTCCGCGCCGCCTTGC
TGTGCGCACAGTTCGAATTCCCCGCGCGCCGCATCACCATCAACCTGGCACCGGCGGATCTACCCAAGGACGGCGGGCGC
TTCGACCTGCCGATCGCGCTCGGCATCCTTGCGGCCAGCGGGCAGATCGACCGCCAGGCCCTGGCCGACTACGAATTCCT
CGGCGAGCTGGCCCTCACCGGCGAGCTGCGCGGCATCGATGGGGTGCTGCCTGCGGCCCTGGCCGCCGCGCAGGCCGGGC
GGCGCCTGATCGTGCCGCTGGCCAACGGCGCCGAGGCGGCCATCGCCGGACACGTGCAGGCCTTTACCGCGCGCACCTTG
CTGGAAGTGTGCGCCGCACTCAACGGCACCCAGCCGCCACCGGCTGCCGAACTAGCCATCGTCGCGCTCGGCGCCCGCGC
GCTACCGGACATGGCCGACGTGCGCGGGCAGCCGCATGCGCGCCGCGCCCTGGAGATCGCCGCGGCCGGCGGCCATCACC
TGCTGCTGGTCGGCAGCCCTGGCTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCCAGTCTGTTGCCGGACGCCAGCGAG
GCCGAGGCGCTGGAAACCGCCGCCATCACCTCCATCAGCGGTCGCGGCCTGGACCTGGCGCGCTGGCGGCAACGCCCGTA
TCGCGCCCCGCACCATACCGCCAGCGCGGTGGCGCTGGTGGGCGGTGGCACCCATCCGCGCCCGGGCGAGATCTCATTGG
CGCACAACGGGGTGCTGTTCCTGGACGAGCTGCCCGAATGGCAGCGGCAGACCCTGGAAGTGCTGCGCGAGCCGCTGGAA
TCCGGCGTGGTCACCATCTCGCGGGCCGCGCGCAGCATGGACTTCCCGGCGCGGTTCCAGTTGGTCGCCGCAATGAATCC
CTGCCCGTGCGGCTGGGCCGGCGACGCCAGCGGGCGATGCCGCTGCAGTGGTGACGCCATCCGCCGGTATCGCGGCCGCA
TCTCCGGGCCGCTGCTGGATCGCATCGACCTGCACGTCGACGTGCCGCGCCTGCCGCCGCAGGCGCTGCGCAGCGGTGCG
ACCGGCGAGGACAGTGCCAGCGTGCGTGCACGCGTCGCCGCCGCACGCGACCGCCAGCAGGCACGTGCGCAGGTGCCCAA
TGCCCGGCTGGACCAGGCCGCCACCGACCGCCACTGCCGGTTGGGCAATGACGATCAGCTGCTGCTGGAACGCGCCATCG
AACATCTGCAGCTGTCTGCGCGCTCGATGCATCGCATCCTGCGCGTCTCACGCACCATCGCCGATCTCGACGACAGCGCC
GACATCGCCACTCGTCACCTCACCGAAGCCATCGGCTACCGCAAACTCGACCGTGCCCTTGATACCTCCAGCGCCGCGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.941

100

0.549
  comM Vibrio campbellii strain DS40M4

54.102

100

0.547
  comM Haemophilus influenzae Rd KW20

53.922

100

0.543
  comM Glaesserella parasuis strain SC1401

54.15

100

0.542
  comM Legionella pneumophila str. Paris

52.894

99.012

0.524
  comM Legionella pneumophila strain ERS1305867

52.894

99.012

0.524
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.047

100

0.46

Multiple sequence alignment