Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABFU56_RS20645 Genome accession   NZ_CP155998
Coordinates   4691745..4693265 (+) Length   506 a.a.
NCBI ID   WP_040941986.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. campestris strain LMG 00574     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4686745..4698265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU56_RS20620 (ABFU56_20615) speE 4687691..4688548 (+) 858 WP_011038944.1 polyamine aminopropyltransferase -
  ABFU56_RS20625 (ABFU56_20620) - 4688663..4689445 (-) 783 WP_057673499.1 hypothetical protein -
  ABFU56_RS20630 (ABFU56_20625) - 4689983..4690642 (+) 660 WP_057673501.1 RIO1 family regulatory kinase/ATPase -
  ABFU56_RS20635 (ABFU56_20630) - 4690928..4691302 (-) 375 WP_029217016.1 P-II family nitrogen regulator -
  ABFU56_RS20640 (ABFU56_20635) ubiK 4691457..4691729 (+) 273 WP_040941985.1 ubiquinone biosynthesis accessory factor UbiK -
  ABFU56_RS20645 (ABFU56_20640) comM 4691745..4693265 (+) 1521 WP_040941986.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABFU56_RS20650 (ABFU56_20645) - 4693622..4694131 (+) 510 WP_057673502.1 lipocalin family protein -
  ABFU56_RS20655 (ABFU56_20650) - 4694142..4694318 (-) 177 WP_012439469.1 hypothetical protein -
  ABFU56_RS20660 (ABFU56_20655) - 4694700..4696259 (+) 1560 WP_050911777.1 EAL domain-containing protein -
  ABFU56_RS20665 (ABFU56_20660) - 4696730..4696900 (-) 171 WP_154727132.1 hypothetical protein -
  ABFU56_RS20670 (ABFU56_20665) - 4696914..4698035 (-) 1122 WP_011038953.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53881.58 Da        Isoelectric Point: 8.3405

>NTDB_id=1000968 ABFU56_RS20645 WP_040941986.1 4691745..4693265(+) (comM) [Xanthomonas campestris pv. campestris strain LMG 00574]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKDGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGIDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVQAFTARTL
LEVCAALNGTQPPPPAELAIVALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPSLLPDASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTISRAARSMDFPARFQLVAAMNPCPCGWAGDASGRCRCSGDAIRRYRSRISGPLLDRIDLHVDVPRLPPQALRSGA
TGEDSASVRARVAAARERQQARAQVPNARLDQAATDRHCRLGNDDQLLLERAIEHLQLSARSMHRILRVSRTIADLDDSA
DIATRHLTEAIGYRKLDRALDTSSAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1000968 ABFU56_RS20645 WP_040941986.1 4691745..4693265(+) (comM) [Xanthomonas campestris pv. campestris strain LMG 00574]
ATGAGTCTGGCACTGGTGCACAGCCGTGCCCGCGTGGGAGTGCACGCGCCTGAAGTCCGGGTGGAAGTGCATCTCTCCGG
CGGCCTGCCTTCCACCCAGATCGTGGGCCTGCCCGAGGCCGCGGTGCGCGAGTCACGCGAACGGGTCCGTGCCGCCTTGC
TGTGCGCACAGTTCGAATTCCCCGCACGCCGCATCACCATCAACCTGGCGCCGGCGGATCTGCCCAAGGACGGCGGCCGC
TTCGACCTGCCGATCGCGCTCGGCATCCTTGCGGCCAGCGGGCAGATCGACCGCCAGGCCCTGGCCGACTACGAATTCCT
CGGCGAGCTGGCCCTCACCGGCGAGCTGCGCGGCATCGATGGGGTGCTGCCTGCGGCCCTGGCCGCCGCGCAGGCCGGGC
GGCGCCTGATCGTGCCGCTGGCCAACGGCGCCGAGGCGGCGATTGCCGGACACGTGCAAGCCTTTACCGCGCGCACCTTG
TTGGAAGTGTGCGCCGCACTTAACGGCACCCAGCCGCCACCGCCCGCCGAACTGGCGATCGTGGCGCTCGGCGCCCGCGC
GCTACCGGACATGGCCGACGTGCGCGGGCAACCGCATGCGCGCCGGGCGCTGGAGATCGCCGCGGCCGGCGGCCATCACC
TGTTGCTGGTCGGCAGCCCTGGCTGCGGCAAGACCTTGCTGGCCTCGCGCCTGCCCAGTCTGTTGCCGGACGCCAGCGAG
GCCGAGGCGCTGGAAACCGCCGCCATCACCTCCATCAGCGGACGCGGCCTGGACCTGGCGCGCTGGCGGCAACGTCCTTA
TCGCGCCCCGCACCATACCGCCAGCGCGGTGGCGCTGGTGGGCGGTGGCACCCATCCGCGCCCGGGTGAGATCTCATTGG
CGCACAACGGGGTACTGTTCCTGGACGAGCTACCCGAATGGCAGCGGCAGACCCTGGAAGTGCTGCGCGAGCCACTGGAG
TCCGGCGTGGTCACCATCTCGCGGGCCGCGCGCAGCATGGACTTCCCGGCGCGGTTCCAGTTGGTCGCCGCAATGAATCC
CTGCCCGTGCGGCTGGGCCGGCGACGCCAGCGGGCGATGCCGCTGCAGTGGTGACGCCATCCGCCGGTATCGCAGCCGCA
TCTCCGGGCCGCTGCTGGATCGCATCGACCTGCACGTCGACGTGCCGCGCCTGCCGCCGCAGGCACTGCGCAGCGGTGCG
ACCGGCGAGGACAGTGCCAGCGTGCGTGCACGCGTTGCCGCCGCACGCGAACGCCAGCAGGCACGTGCACAGGTGCCCAA
TGCCCGCCTGGACCAGGCCGCCACTGACCGCCACTGCCGGTTGGGCAATGACGATCAGCTGCTGCTGGAACGCGCCATCG
AACATCTGCAGCTGTCCGCACGGTCGATGCACCGCATCCTGCGCGTTTCGCGCACCATCGCCGATCTCGACGACAGCGCC
GACATCGCCACCCGTCACCTCACCGAAGCCATCGGCTACCGCAAACTCGACCGCGCTCTCGATACCTCCAGCGCCGCATG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.336

100

0.553
  comM Haemophilus influenzae Rd KW20

54.118

100

0.545
  comM Vibrio campbellii strain DS40M4

53.711

100

0.543
  comM Glaesserella parasuis strain SC1401

53.953

100

0.54
  comM Legionella pneumophila str. Paris

53.187

99.209

0.528
  comM Legionella pneumophila strain ERS1305867

53.187

99.209

0.528
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.047

100

0.46

Multiple sequence alignment