Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABFU58_RS19470 Genome accession   NZ_CP155980
Coordinates   4474235..4475755 (+) Length   506 a.a.
NCBI ID   WP_040941986.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. raphani strain CFBP 6579     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4469235..4480755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU58_RS19445 (ABFU58_19455) speE 4470191..4471048 (+) 858 WP_011038944.1 polyamine aminopropyltransferase -
  ABFU58_RS19450 (ABFU58_19460) - 4471163..4471945 (-) 783 WP_323534049.1 hypothetical protein -
  ABFU58_RS19455 (ABFU58_19465) - 4472458..4473117 (+) 660 WP_323534050.1 kinase -
  ABFU58_RS19460 (ABFU58_19470) - 4473418..4473756 (-) 339 WP_042595602.1 P-II family nitrogen regulator -
  ABFU58_RS19465 (ABFU58_19475) ubiK 4473947..4474219 (+) 273 WP_011038948.1 ubiquinone biosynthesis accessory factor UbiK -
  ABFU58_RS19470 (ABFU58_19480) comM 4474235..4475755 (+) 1521 WP_040941986.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABFU58_RS19475 (ABFU58_19485) - 4476112..4476621 (+) 510 WP_042595605.1 lipocalin family protein -
  ABFU58_RS19480 (ABFU58_19490) - 4476632..4476808 (-) 177 WP_012439469.1 hypothetical protein -
  ABFU58_RS19485 (ABFU58_19495) - 4477190..4478749 (+) 1560 WP_323534104.1 EAL domain-containing protein -
  ABFU58_RS19490 (ABFU58_19500) - 4478781..4479038 (+) 258 WP_323534051.1 hypothetical protein -
  ABFU58_RS19495 (ABFU58_19505) - 4479212..4479382 (-) 171 WP_323534052.1 hypothetical protein -
  ABFU58_RS19500 (ABFU58_19510) - 4479396..4480517 (-) 1122 WP_323534053.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53881.58 Da        Isoelectric Point: 8.3405

>NTDB_id=1000664 ABFU58_RS19470 WP_040941986.1 4474235..4475755(+) (comM) [Xanthomonas campestris pv. raphani strain CFBP 6579]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKDGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGIDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVQAFTARTL
LEVCAALNGTQPPPPAELAIVALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPSLLPDASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTISRAARSMDFPARFQLVAAMNPCPCGWAGDASGRCRCSGDAIRRYRSRISGPLLDRIDLHVDVPRLPPQALRSGA
TGEDSASVRARVAAARERQQARAQVPNARLDQAATDRHCRLGNDDQLLLERAIEHLQLSARSMHRILRVSRTIADLDDSA
DIATRHLTEAIGYRKLDRALDTSSAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1000664 ABFU58_RS19470 WP_040941986.1 4474235..4475755(+) (comM) [Xanthomonas campestris pv. raphani strain CFBP 6579]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGAGTGCACGCGCCTGAAGTCCGGGTGGAAGTGCATCTCTCCGG
CGGCCTGCCTTCCACCCAGATCGTGGGCCTGCCCGAGGCCGCGGTGCGTGAGTCACGCGAACGGGTCCGTGCCGCCTTGC
TGTGCGCACAGTTCGAATTCCCCGCACGCCGCATCACCATCAACCTGGCGCCGGCGGATCTGCCCAAGGACGGCGGCCGC
TTCGACCTGCCGATCGCGCTCGGCATCCTTGCGGCCAGCGGGCAGATCGACCGCCAGGCCCTGGCCGACTACGAATTCCT
CGGCGAGCTGGCCCTCACCGGCGAGCTGCGCGGCATCGATGGGGTGCTGCCTGCGGCCCTGGCCGCCGCGCAGGCCGGGC
GGCGCCTGATCGTGCCGCTGGCCAACGGCGCCGAGGCGGCCATCGCCGGACACGTGCAGGCCTTTACCGCGCGCACCTTG
CTGGAAGTGTGCGCCGCACTCAACGGCACCCAGCCGCCACCGCCCGCCGAACTGGCGATCGTGGCGCTCGGCGCCCGCGC
GCTACCGGACATGGCCGACGTGCGCGGGCAGCCGCATGCGCGCCGGGCGCTGGAGATCGCCGCGGCCGGCGGCCATCACC
TGTTGCTGGTCGGCAGCCCTGGCTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCCAGTCTGTTGCCGGACGCCAGCGAG
GCCGAGGCGCTGGAAACCGCCGCCATCACCTCCATCAGCGGACGCGGCCTGGACCTGGCGCGCTGGCGGCAACGCCCTTA
TCGCGCCCCGCACCACACCGCCAGCGCGGTGGCGCTGGTGGGCGGTGGCACCCATCCGCGCCCGGGCGAGATCTCATTGG
CGCACAACGGGGTGCTGTTCCTGGACGAGCTGCCCGAGTGGCAGCGGCAGACCCTGGAAGTGCTGCGCGAGCCACTGGAG
TCCGGCGTGGTCACCATCTCGCGGGCTGCGCGCAGCATGGACTTTCCGGCGCGGTTCCAGCTGGTCGCCGCAATGAACCC
CTGCCCGTGCGGCTGGGCCGGCGATGCCAGCGGGCGATGCCGCTGCAGTGGTGACGCCATCCGCCGGTATCGCAGCCGCA
TCTCCGGGCCGCTGCTGGATCGCATCGACCTGCACGTCGACGTGCCGCGCCTGCCGCCGCAGGCACTGCGCAGCGGTGCG
ACCGGCGAGGACAGTGCCAGCGTGCGTGCACGCGTTGCTGCTGCACGCGAACGCCAGCAGGCACGTGCACAGGTGCCCAA
TGCCCGCCTGGACCAGGCCGCCACTGACCGCCACTGCCGGTTGGGCAATGACGATCAGCTGCTGCTGGAACGCGCCATCG
AACATCTGCAGCTGTCCGCGCGCTCGATGCATCGCATCCTGCGCGTCTCGCGCACCATCGCCGATCTCGACGACAGCGCC
GACATCGCCACCCGTCACCTCACCGAAGCCATCGGCTACCGCAAACTCGACCGTGCCCTTGATACCTCCAGCGCCGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.336

100

0.553
  comM Haemophilus influenzae Rd KW20

54.118

100

0.545
  comM Vibrio campbellii strain DS40M4

53.711

100

0.543
  comM Glaesserella parasuis strain SC1401

53.953

100

0.54
  comM Legionella pneumophila str. Paris

53.187

99.209

0.528
  comM Legionella pneumophila strain ERS1305867

53.187

99.209

0.528
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.047

100

0.46

Multiple sequence alignment