Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABFU76_RS19185 Genome accession   NZ_CP155979
Coordinates   4440343..4441863 (+) Length   506 a.a.
NCBI ID   WP_043921553.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. raphani strain CFBP 6580     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4435343..4446863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU76_RS19160 (ABFU76_19135) speE 4436301..4437158 (+) 858 WP_228443071.1 polyamine aminopropyltransferase -
  ABFU76_RS19165 (ABFU76_19140) - 4437273..4438055 (-) 783 WP_407463748.1 hypothetical protein -
  ABFU76_RS19170 (ABFU76_19145) - 4438592..4439251 (+) 660 WP_228443066.1 RIO1 family regulatory kinase/ATPase -
  ABFU76_RS19175 (ABFU76_19150) - 4439526..4439900 (-) 375 WP_200902597.1 P-II family nitrogen regulator -
  ABFU76_RS19180 (ABFU76_19155) ubiK 4440055..4440327 (+) 273 WP_040941985.1 ubiquinone biosynthesis accessory factor UbiK -
  ABFU76_RS19185 (ABFU76_19160) comM 4440343..4441863 (+) 1521 WP_043921553.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABFU76_RS19190 (ABFU76_19165) - 4442246..4442755 (+) 510 WP_042595605.1 lipocalin family protein -
  ABFU76_RS19195 (ABFU76_19170) - 4442766..4442942 (-) 177 WP_012439469.1 hypothetical protein -
  ABFU76_RS19200 (ABFU76_19175) - 4443324..4444883 (+) 1560 WP_228443064.1 EAL domain-containing protein -
  ABFU76_RS19205 (ABFU76_19180) - 4445417..4445587 (-) 171 WP_154727132.1 hypothetical protein -
  ABFU76_RS19210 (ABFU76_19185) - 4445601..4446722 (-) 1122 WP_011038953.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53883.60 Da        Isoelectric Point: 8.3405

>NTDB_id=1000646 ABFU76_RS19185 WP_043921553.1 4440343..4441863(+) (comM) [Xanthomonas campestris pv. raphani strain CFBP 6580]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKDGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGIDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVQAFTARTL
LEVCAALNGTQPPPAAELAIVALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPSLLPDASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTISRAARSMDFPARFQLVAAMNPCPCGWAGDASGRCRCSGDAIRRYRSRISGPLLDRIDLHVDVPRLPPQALRSGA
TGEDSASVRARVAAARERQQVRAQVPNARLDQAATDRHCRLGNDDQLLLERAIEHLQLSARSMHRILRVSRTIADLDDSA
DIATRHLTEAIGYRKLDRALDTSSAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1000646 ABFU76_RS19185 WP_043921553.1 4440343..4441863(+) (comM) [Xanthomonas campestris pv. raphani strain CFBP 6580]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGAGTGCACGCGCCTGAAGTCCGTGTGGAAGTGCATCTCTCCGG
CGGCCTGCCTTCCACCCAGATCGTGGGCCTGCCCGAGGCCGCGGTGCGCGAGTCACGCGAACGGGTCCGTGCCGCCTTGC
TGTGCGCACAGTTCGAATTCCCCGCACGCCGCATCACCATCAACCTGGCGCCGGCGGATCTGCCCAAGGACGGCGGCCGC
TTCGACCTGCCGATCGCGCTCGGCATCCTTGCGGCCAGCGGGCAGATCGACCGCCAGGCCCTGGCCGACTACGAATTCCT
CGGCGAGCTGGCCCTCACCGGCGAGCTGCGCGGCATCGATGGGGTGCTGCCTGCGGCCCTGGCCGCCGCGCAGGCCGGGC
GGCGCCTGATCGTGCCGCTGGCCAACGGCGCCGAGGCGGCGATTGCCGGACACGTGCAGGCCTTTACCGCGCGCACCTTG
CTGGAAGTGTGCGCCGCACTCAACGGCACCCAGCCACCACCGGCCGCCGAACTGGCGATCGTGGCGCTCGGCGCACGCGC
GTTACCCGACATGGCCGACGTGCGCGGGCAGCCGCATGCGCGCCGGGCGCTGGAGATCGCCGCGGCCGGCGGCCATCACC
TGCTGCTGGTCGGCAGCCCTGGCTGCGGCAAGACCTTGCTGGCCTCGCGCCTGCCCAGTCTGTTGCCGGACGCCAGCGAG
GCCGAGGCGCTGGAAACCGCCGCCATCACCTCCATCAGCGGACGCGGCCTGGACCTGGCGCGCTGGCGGCAACGTCCTTA
TCGCGCCCCGCACCATACCGCCAGCGCGGTGGCGCTGGTGGGCGGTGGCACCCATCCGCGCCCGGGTGAGATCTCATTGG
CGCACAACGGGGTGCTGTTCCTGGACGAGCTGCCCGAGTGGCAGCGGCAGACCCTGGAAGTGCTGCGCGAGCCACTGGAG
TCCGGCGTGGTCACCATCTCGCGGGCCGCGCGCAGCATGGACTTTCCGGCGCGGTTCCAGTTGGTCGCCGCAATGAATCC
CTGCCCGTGCGGCTGGGCCGGCGACGCCAGCGGGCGATGCCGCTGCAGTGGTGACGCCATCCGCCGGTATCGCAGCCGCA
TCTCCGGGCCGCTGCTGGATCGCATCGACCTGCACGTCGACGTGCCGCGCCTGCCGCCGCAGGCACTGCGCAGCGGTGCG
ACCGGCGAGGACAGTGCCAGCGTGCGTGCACGCGTTGCCGCCGCACGCGAACGCCAGCAGGTACGTGCGCAGGTGCCCAA
TGCCCGCCTGGACCAGGCCGCCACCGACCGCCACTGCCGGTTGGGCAATGACGATCAGCTGCTGCTGGAACGCGCCATCG
AACACCTGCAACTGTCCGCGCGCTCGATGCATCGCATCCTGCGCGTTTCGCGCACCATCGCCGATCTCGACGATAGCGCC
GACATCGCCACCCGTCACCTCACCGAAGCCATCGGCTACCGCAAACTCGACCGTGCCCTTGATACCTCCAGCGCCGCATG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.138

100

0.551
  comM Haemophilus influenzae Rd KW20

54.118

100

0.545
  comM Vibrio campbellii strain DS40M4

53.516

100

0.542
  comM Glaesserella parasuis strain SC1401

54.15

100

0.542
  comM Legionella pneumophila str. Paris

52.894

99.012

0.524
  comM Legionella pneumophila strain ERS1305867

52.894

99.012

0.524
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

100

0.462

Multiple sequence alignment