Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABFU48_RS19640 Genome accession   NZ_CP155976
Coordinates   4504782..4506302 (+) Length   506 a.a.
NCBI ID   WP_323531259.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. raphani strain 0516     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4499782..4511302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU48_RS19615 (ABFU48_19565) speE 4500717..4501574 (+) 858 WP_011038944.1 polyamine aminopropyltransferase -
  ABFU48_RS19620 (ABFU48_19570) - 4501689..4502471 (-) 783 WP_116903416.1 hypothetical protein -
  ABFU48_RS19625 (ABFU48_19575) - 4503000..4503659 (+) 660 WP_274341186.1 RIO1 family regulatory kinase/ATPase -
  ABFU48_RS19630 (ABFU48_19580) - 4503965..4504339 (-) 375 WP_407469802.1 P-II family nitrogen regulator -
  ABFU48_RS19635 (ABFU48_19585) ubiK 4504494..4504766 (+) 273 WP_040941985.1 ubiquinone biosynthesis accessory factor UbiK -
  ABFU48_RS19640 (ABFU48_19590) comM 4504782..4506302 (+) 1521 WP_323531259.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABFU48_RS19645 (ABFU48_19595) - 4506684..4507193 (+) 510 WP_014506278.1 lipocalin family protein -
  ABFU48_RS19650 (ABFU48_19600) - 4507204..4507380 (-) 177 WP_012439469.1 hypothetical protein -
  ABFU48_RS19655 (ABFU48_19605) - 4507762..4509321 (+) 1560 WP_323531258.1 EAL domain-containing protein -
  ABFU48_RS19660 (ABFU48_19610) - 4509426..4509701 (+) 276 WP_323531257.1 hypothetical protein -
  ABFU48_RS19665 (ABFU48_19615) - 4510106..4511227 (-) 1122 WP_014506274.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53927.60 Da        Isoelectric Point: 8.1526

>NTDB_id=1000595 ABFU48_RS19640 WP_323531259.1 4504782..4506302(+) (comM) [Xanthomonas campestris pv. raphani strain 0516]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKDGGR
FDLPIALGILAASGQIDRQALDDYEFLGELALTGELRGIDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVQAFTARTL
LEVCAALNGTQPPPAAELAIVALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPSLLPDASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTISRAARSMDFPARFQLVAAMNPCPCGWAGDASGRCRCSGDAIRRYRSRISGPLLDRIDLHVDVPRLPPQALRSGA
TGEDSASVRARVAAARERQQVRAQVPNARLDQAATDRHCRLGNDDQLLLERAIEHLQLSARSMHRILRVSRTIADLDDSA
DIATRHLTEAIGYRKLDRALDTSSAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1000595 ABFU48_RS19640 WP_323531259.1 4504782..4506302(+) (comM) [Xanthomonas campestris pv. raphani strain 0516]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGAGTGCACGCGCCTGAAGTCCGGGTGGAAGTGCATCTCTCCGG
CGGCCTGCCCTCCACCCAGATCGTGGGCCTGCCCGAGGCCGCGGTGCGCGAGTCACGCGAACGGGTCCGTGCCGCCTTGC
TGTGCGCACAGTTCGAATTCCCCGCACGCCGCATCACCATCAACCTGGCGCCGGCGGATCTACCCAAGGACGGCGGGCGC
TTCGACCTGCCGATCGCGCTCGGCATCCTTGCGGCCAGCGGGCAGATCGACCGCCAGGCCCTGGACGACTACGAATTCCT
CGGCGAGCTGGCCCTCACCGGCGAGCTGCGCGGCATCGATGGGGTGCTGCCTGCGGCCCTGGCCGCCGCGCAGGCCGGGC
GGCGCCTGATCGTGCCGCTGGCCAACGGCGCCGAGGCGGCCATCGCCGGACACGTGCAGGCCTTTACCGCGCGCACCTTG
CTGGAAGTGTGCGCCGCACTCAACGGCACCCAGCCGCCACCGGCCGCCGAACTCGCGATCGTCGCGCTCGGCGCACGCGC
ACTACCGGACATGGCCGACGTGCGCGGGCAGCCGCATGCGCGCCGGGCGCTGGAGATCGCCGCGGCCGGCGGCCATCACC
TGCTGCTGGTCGGCAGCCCTGGCTGCGGCAAGACCTTGCTGGCCTCGCGCCTGCCCAGTCTGTTGCCGGACGCCAGCGAG
GCCGAGGCGCTGGAAACCGCCGCCATCACCTCCATCAGCGGACGCGGCCTGGACCTGGCGCGCTGGCGGCAACGCCCTTA
TCGCGCCCCGCACCACACCGCCAGCGCGGTGGCGCTGGTGGGCGGTGGCACCCATCCGCGCCCGGGCGAGATCTCATTGG
CGCACAACGGGGTGCTGTTCCTGGACGAGCTGCCCGAGTGGCAGCGGCAGACCCTGGAAGTGCTGCGCGAGCCACTGGAG
TCCGGCGTGGTCACCATCTCGCGGGCCGCGCGCAGCATGGACTTTCCGGCGCGGTTCCAGTTGGTCGCCGCAATGAATCC
CTGCCCGTGCGGCTGGGCCGGCGACGCCAGCGGGCGATGCCGCTGCAGTGGTGACGCCATCCGCCGGTATCGCAGCCGCA
TCTCCGGGCCGCTGCTGGATCGCATCGACCTGCACGTCGACGTGCCGCGCCTGCCGCCGCAGGCACTGCGCAGCGGTGCG
ACCGGCGAGGACAGTGCCAGCGTGCGTGCACGCGTTGCCGCCGCACGCGAACGCCAGCAGGTACGTGCGCAGGTGCCCAA
TGCCCGCCTGGACCAGGCCGCCACCGACCGCCACTGCCGGTTGGGCAATGACGATCAGCTGCTGCTGGAACGCGCCATCG
AACACCTGCAACTGTCCGCGCGCTCGATGCATCGCATCCTGCGCGTTTCGCGCACCATCGCCGATCTCGACGATAGCGCC
GACATCGCCACCCGTCACCTCACCGAAGCCATCGGCTACCGCAAACTCGACCGTGCCCTTGATACCTCCAGCGCCGCATG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.138

100

0.551
  comM Haemophilus influenzae Rd KW20

54.118

100

0.545
  comM Vibrio campbellii strain DS40M4

53.516

100

0.542
  comM Glaesserella parasuis strain SC1401

54.15

100

0.542
  comM Legionella pneumophila str. Paris

52.695

99.012

0.522
  comM Legionella pneumophila strain ERS1305867

52.695

99.012

0.522
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.85

100

0.459

Multiple sequence alignment