Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABFU43_RS20155 Genome accession   NZ_CP155975
Coordinates   4599718..4601238 (+) Length   506 a.a.
NCBI ID   WP_043921553.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. raphani strain 0539     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4594718..4606238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU43_RS20130 (ABFU43_20125) speE 4595646..4596503 (+) 858 WP_011038944.1 polyamine aminopropyltransferase -
  ABFU43_RS20135 (ABFU43_20130) - 4596618..4597401 (-) 784 Protein_3892 hypothetical protein -
  ABFU43_RS20140 (ABFU43_20135) - 4597930..4598589 (+) 660 WP_274341186.1 RIO1 family regulatory kinase/ATPase -
  ABFU43_RS20145 (ABFU43_20140) - 4598901..4599275 (-) 375 WP_274341188.1 P-II family nitrogen regulator -
  ABFU43_RS20150 (ABFU43_20145) ubiK 4599430..4599702 (+) 273 WP_040941985.1 ubiquinone biosynthesis accessory factor UbiK -
  ABFU43_RS20155 (ABFU43_20150) comM 4599718..4601238 (+) 1521 WP_043921553.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABFU43_RS20160 (ABFU43_20155) - 4601621..4602130 (+) 510 WP_014506278.1 lipocalin family protein -
  ABFU43_RS20165 (ABFU43_20160) - 4602141..4602317 (-) 177 WP_012439469.1 hypothetical protein -
  ABFU43_RS20170 (ABFU43_20165) - 4602699..4604258 (+) 1560 WP_228944321.1 EAL domain-containing protein -
  ABFU43_RS20175 (ABFU43_20170) - 4604697..4604867 (-) 171 WP_154727132.1 hypothetical protein -
  ABFU43_RS20180 (ABFU43_20175) - 4604881..4606002 (-) 1122 WP_221261707.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53883.60 Da        Isoelectric Point: 8.3405

>NTDB_id=1000578 ABFU43_RS20155 WP_043921553.1 4599718..4601238(+) (comM) [Xanthomonas campestris pv. raphani strain 0539]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKDGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGIDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVQAFTARTL
LEVCAALNGTQPPPAAELAIVALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPSLLPDASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTISRAARSMDFPARFQLVAAMNPCPCGWAGDASGRCRCSGDAIRRYRSRISGPLLDRIDLHVDVPRLPPQALRSGA
TGEDSASVRARVAAARERQQVRAQVPNARLDQAATDRHCRLGNDDQLLLERAIEHLQLSARSMHRILRVSRTIADLDDSA
DIATRHLTEAIGYRKLDRALDTSSAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1000578 ABFU43_RS20155 WP_043921553.1 4599718..4601238(+) (comM) [Xanthomonas campestris pv. raphani strain 0539]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGAGTGCACGCGCCTGAAGTCCGGGTGGAAGTGCATCTCTCCGG
CGGCCTGCCTTCCACCCAGATCGTGGGCCTGCCCGAGGCCGCGGTGCGCGAGTCACGCGAACGGGTCCGTGCCGCCTTGC
TGTGCGCACAGTTCGAATTCCCCGCACGCCGCATCACCATCAACCTGGCGCCGGCGGATCTACCCAAGGACGGCGGGCGC
TTCGACCTGCCGATCGCGCTCGGCATCCTTGCGGCCAGCGGGCAGATCGACCGCCAGGCCCTGGCCGACTACGAATTCCT
CGGCGAACTGGCCCTCACCGGCGAGCTGCGCGGCATCGATGGGGTGCTGCCTGCGGCCCTGGCCGCCGCGCAGGCCGGGC
GGCGCCTGATCGTGCCGCTGGCCAACGGCGCCGAGGCGGCCATCGCCGGACACGTGCAGGCCTTTACCGCGCGCACCTTG
CTGGAAGTGTGCGCCGCACTCAACGGCACCCAGCCACCACCGGCCGCCGAACTGGCGATCGTGGCGCTCGGCGCACGCGC
ACTACCGGACATGGCCGACGTGCGCGGGCAGCCGCATGCGCGCCGCGCCCTGGAGATCGCAGCGGCCGGCGGCCATCACC
TGCTGCTGGTCGGCAGCCCTGGCTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCCAGTCTGTTGCCGGACGCCAGCGAG
GCCGAGGCGCTGGAAACCGCCGCCATCACCTCCATCAGCGGACGCGGCCTGGACCTGGCGCGCTGGCGGCAACGCCCTTA
TCGCGCCCCGCACCACACCGCCAGCGCGGTGGCGCTGGTGGGCGGTGGCACCCATCCGCGCCCGGGCGAGATCTCATTGG
CGCACAACGGGGTGCTGTTCCTGGACGAGCTGCCCGAGTGGCAGCGGCAGACCCTGGAAGTGCTGCGCGAGCCACTGGAG
TCCGGCGTGGTCACCATCTCGCGGGCCGCGCGCAGCATGGACTTTCCGGCGCGGTTCCAGTTGGTCGCCGCAATGAATCC
CTGCCCGTGCGGCTGGGCCGGCGACGCCAGCGGGCGATGCCGCTGCAGTGGTGACGCCATCCGCCGGTATCGCAGCCGCA
TCTCCGGGCCGCTGCTGGATCGCATCGACCTGCACGTCGACGTGCCGCGCCTGCCGCCGCAGGCACTGCGCAGCGGTGCG
ACCGGCGAGGACAGTGCCAGCGTGCGTGCACGCGTTGCCGCCGCACGCGAACGCCAGCAGGTACGTGCGCAGGTGCCCAA
TGCCCGCCTGGACCAGGCCGCCACCGACCGCCACTGCCGGTTGGGCAATGACGATCAGCTGCTGCTGGAACGCGCCATCG
AACACCTGCAACTGTCCGCGCGCTCGATGCATCGCATCCTGCGCGTTTCGCGCACCATCGCCGATCTCGACGATAGCGCC
GACATCGCCACCCGTCACCTCACCGAAGCCATCGGCTACCGCAAACTCGACCGTGCCCTTGATACCTCCAGCGCCGCATG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.138

100

0.551
  comM Haemophilus influenzae Rd KW20

54.118

100

0.545
  comM Vibrio campbellii strain DS40M4

53.516

100

0.542
  comM Glaesserella parasuis strain SC1401

54.15

100

0.542
  comM Legionella pneumophila str. Paris

52.894

99.012

0.524
  comM Legionella pneumophila strain ERS1305867

52.894

99.012

0.524
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

100

0.462

Multiple sequence alignment