Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABFU38_RS19610 Genome accession   NZ_CP155967
Coordinates   4499191..4500711 (+) Length   506 a.a.
NCBI ID   WP_407468803.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. raphani strain BXC#141     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4494191..4505711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU38_RS19585 (ABFU38_19570) speE 4495130..4495987 (+) 858 WP_011038944.1 polyamine aminopropyltransferase -
  ABFU38_RS19590 (ABFU38_19575) - 4496102..4496884 (-) 783 WP_407468801.1 hypothetical protein -
  ABFU38_RS19595 (ABFU38_19580) - 4497412..4498071 (+) 660 WP_407468802.1 RIO1 family regulatory kinase/ATPase -
  ABFU38_RS19600 (ABFU38_19585) - 4498374..4498712 (-) 339 WP_042595602.1 P-II family nitrogen regulator -
  ABFU38_RS19605 (ABFU38_19590) ubiK 4498903..4499175 (+) 273 WP_040941985.1 ubiquinone biosynthesis accessory factor UbiK -
  ABFU38_RS19610 (ABFU38_19595) comM 4499191..4500711 (+) 1521 WP_407468803.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABFU38_RS19615 (ABFU38_19600) - 4501070..4501579 (+) 510 WP_042595605.1 lipocalin family protein -
  ABFU38_RS19620 (ABFU38_19605) - 4501590..4501766 (-) 177 WP_012439469.1 hypothetical protein -
  ABFU38_RS19625 (ABFU38_19610) - 4502148..4503707 (+) 1560 WP_228443064.1 EAL domain-containing protein -
  ABFU38_RS19630 (ABFU38_19615) - 4503795..4504028 (+) 234 WP_407468804.1 hypothetical protein -
  ABFU38_RS19635 (ABFU38_19620) - 4504241..4504411 (-) 171 WP_154727132.1 hypothetical protein -
  ABFU38_RS19640 (ABFU38_19625) - 4504425..4505546 (-) 1122 WP_228958051.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53907.59 Da        Isoelectric Point: 8.3405

>NTDB_id=1000438 ABFU38_RS19610 WP_407468803.1 4499191..4500711(+) (comM) [Xanthomonas campestris pv. raphani strain BXC#141]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKDGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGIDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVQAFTARTL
LEVCAALNGTQPPPAAELAIVAFGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPSLLPDASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTISRAARSMDFPARFQLVAAMNPCPCGWAGDASGRCRCSGDAMRRYRSRISGPLLDRIDLHVDVPRLPPQALRSGA
TGEDSASVRARVAAARERQQARAQVPNARLDQAATDRHCRLGNDDQLLLERAIEHLQLSARSMHRILRVSRTIADLDDSA
DIATRHLTEAIGYRKLDRALDTSSAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1000438 ABFU38_RS19610 WP_407468803.1 4499191..4500711(+) (comM) [Xanthomonas campestris pv. raphani strain BXC#141]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGAGTGCACGCGCCTGAAGTCCGGGTGGAAGTGCATCTCTCCGG
CGGCCTGCCTTCCACCCAGATCGTGGGCCTGCCCGAGGCCGCGGTGCGTGAGTCACGCGAACGGGTCCGTGCCGCCTTGC
TGTGCGCACAGTTCGAATTCCCCGCACGCCGCATCACCATCAACCTGGCGCCGGCGGATCTGCCCAAGGACGGCGGCCGC
TTCGACCTGCCGATCGCGCTCGGCATCCTTGCGGCCAGCGGGCAGATCGACCGCCAGGCCCTGGCCGACTACGAATTCCT
CGGCGAGCTGGCCCTCACCGGCGAGCTGCGCGGCATCGATGGGGTGCTGCCTGCGGCCCTGGCCGCCGCGCAGGCCGGGC
GGCGCCTGATCGTGCCGCTGGCCAACGGCGCCGAGGCGGCCATCGCCGGACACGTGCAGGCCTTTACCGCGCGCACTTTG
CTGGAAGTGTGCGCCGCACTCAACGGCACCCAGCCGCCACCGGCCGCCGAACTGGCCATCGTCGCGTTCGGCGCCCGCGC
GCTACCGGACATGGCCGACGTGCGCGGGCAGCCGCATGCACGCCGGGCCCTGGAGATCGCCGCGGCCGGCGGCCATCACC
TGCTGCTGGTCGGCAGCCCTGGCTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCCAGTCTGTTGCCGGACGCCAGCGAG
GCCGAGGCGCTGGAAACCGCCGCCATCACCTCCATCAGCGGTCGCGGCCTGGACCTGGCGCGCTGGCGGCAACGCCCTTA
TCGCGCCCCGCACCACACCGCCAGCGCGGTGGCGCTGGTGGGCGGCGGCACCCATCCGCGCCCGGGCGAGATCTCATTGG
CGCACAACGGGGTGCTGTTCCTGGACGAGCTGCCCGAATGGCAGCGGCAGACCCTGGAAGTGCTGCGCGAGCCACTGGAG
TCCGGCGTGGTCACCATCTCACGGGCCGCGCGCAGCATGGACTTCCCGGCGCGGTTCCAGCTGGTCGCCGCGATGAATCC
CTGCCCGTGCGGCTGGGCCGGCGATGCCAGCGGGCGATGCCGCTGCAGTGGTGACGCCATGCGCCGGTATCGCAGCCGCA
TCTCCGGGCCGCTGCTGGATCGCATCGACCTGCACGTCGACGTGCCGCGCCTGCCGCCGCAGGCACTGCGCAGCGGTGCG
ACCGGCGAAGACAGTGCCAGCGTGCGTGCACGCGTTGCCGCCGCACGCGAACGCCAGCAGGCACGTGCACAGGTGCCCAA
TGCCCGCCTGGACCAGGCCGCCACTGACCGCCACTGCCGGTTGGGCAATGACGATCAGCTGCTGCTGGAACGCGCCATCG
AACATCTGCAGCTGTCCGCGCGCTCGATGCACCGCATCCTGCGCGTCTCGCGCACCATCGCCGATCTCGACGACAGCGCC
GACATCGCCACCCGCCACCTCACCGAAGCCATCGGCTACCGCAAACTCGACCGCGCCCTCGATACCTCCAGCGCCGCATG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.138

100

0.551
  comM Haemophilus influenzae Rd KW20

54.118

100

0.545
  comM Vibrio campbellii strain DS40M4

53.516

100

0.542
  comM Glaesserella parasuis strain SC1401

54.15

100

0.542
  comM Legionella pneumophila str. Paris

52.495

99.012

0.52
  comM Legionella pneumophila strain ERS1305867

52.495

99.012

0.52
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.64

100

0.466

Multiple sequence alignment