Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABFU65_RS19590 Genome accession   NZ_CP155964
Coordinates   4472668..4474188 (+) Length   506 a.a.
NCBI ID   WP_323549696.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. raphani strain BR25     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4467668..4479188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU65_RS19565 (ABFU65_19500) speE 4468611..4469468 (+) 858 WP_011038944.1 polyamine aminopropyltransferase -
  ABFU65_RS19570 (ABFU65_19505) - 4469583..4470365 (-) 783 WP_407472162.1 hypothetical protein -
  ABFU65_RS19575 (ABFU65_19510) - 4470892..4471551 (+) 660 WP_323549694.1 RIO1 family regulatory kinase/ATPase -
  ABFU65_RS19580 (ABFU65_19515) - 4471851..4472189 (-) 339 WP_407472163.1 P-II family nitrogen regulator -
  ABFU65_RS19585 (ABFU65_19520) ubiK 4472380..4472652 (+) 273 WP_011038948.1 ubiquinone biosynthesis accessory factor UbiK -
  ABFU65_RS19590 (ABFU65_19525) comM 4472668..4474188 (+) 1521 WP_323549696.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABFU65_RS19595 (ABFU65_19530) - 4474547..4475056 (+) 510 WP_042595605.1 lipocalin family protein -
  ABFU65_RS19600 (ABFU65_19535) - 4475067..4475243 (-) 177 WP_012439469.1 hypothetical protein -
  ABFU65_RS19605 (ABFU65_19540) - 4475625..4477184 (+) 1560 WP_012439470.1 EAL domain-containing protein -
  ABFU65_RS19610 (ABFU65_19545) - 4477654..4477824 (-) 171 WP_323549697.1 hypothetical protein -
  ABFU65_RS19615 (ABFU65_19550) - 4477838..4478959 (-) 1122 WP_042595610.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53885.57 Da        Isoelectric Point: 8.3405

>NTDB_id=1000385 ABFU65_RS19590 WP_323549696.1 4472668..4474188(+) (comM) [Xanthomonas campestris pv. raphani strain BR25]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKDGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGIDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVQAFTARTL
LEVCAALNGTQPPPAAELAIVALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPSLLPDASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTISRAARSMDFPARFQLVAAMNPCPCGWAGDASGRCRCSGDAIRRYRSRLSGPLLDRIDLHVDVPRLPPQALRSGA
TGEDSASVRTRVAAARERQQARAQVPNARLDQAATDRHCRLGNDDQLLLERAIEHLQLSARSMHRILRVSRTIADLDDSA
DIATRHLTEAIGYRKLDRALDTSSAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1000385 ABFU65_RS19590 WP_323549696.1 4472668..4474188(+) (comM) [Xanthomonas campestris pv. raphani strain BR25]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGAGTGCACGCGCCTGAAGTCCGGGTGGAAGTGCATCTCTCCGG
CGGCCTGCCTTCCACCCAGATCGTGGGCCTGCCCGAGGCCGCGGTTCGCGAGTCACGCGAACGGGTCCGTGCCGCCTTGC
TGTGCGCACAGTTCGAATTCCCCGCACGCCGCATCACCATCAACCTGGCGCCGGCGGATCTGCCCAAGGACGGCGGGCGC
TTCGACCTGCCGATCGCGCTCGGCATCCTTGCGGCCAGCGGGCAGATCGACCGCCAGGCCCTGGCCGACTACGAATTCCT
CGGCGAGTTGGCCCTCACCGGCGAGCTGCGCGGCATCGATGGGGTGCTGCCTGCGGCCCTGGCCGCCGCGCAGGCCGGGC
GGCGCCTGATCGTGCCGCTGGCCAACGGCGCCGAGGCGGCGATTGCCGGACACGTGCAGGCCTTTACCGCGCGCACCTTG
CTGGAAGTGTGCGCCGCACTCAACGGCACCCAGCCGCCACCGGCCGCCGAACTGGCCATCGTCGCGCTCGGCGCCCGCGC
GCTACCGGACATGGCCGACGTGCGCGGGCAACCGCATGCGCGCCGGGCGCTGGAGATCGCCGCGGCCGGCGGCCATCACC
TGCTGCTGGTCGGCAGCCCTGGCTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCCAGTCTGTTGCCGGACGCCAGCGAG
GCCGAGGCGCTGGAAACCGCCGCCATCACCTCCATCAGCGGACGCGGCTTGGACCTGGCCCGCTGGCGGCAACGCCCTTA
TCGCGCACCGCACCACACCGCCAGCGCGGTGGCGCTGGTGGGCGGCGGCACCCATCCGCGCCCGGGCGAGATCTCATTGG
CGCACAACGGGGTGCTGTTCCTTGACGAGCTGCCCGAGTGGCAGCGGCAGACCCTGGAAGTGCTGCGCGAGCCACTGGAG
TCCGGCGTGGTCACCATCTCACGGGCCGCGCGTAGCATGGACTTCCCGGCGCGGTTCCAGCTGGTCGCCGCGATGAATCC
CTGCCCGTGCGGCTGGGCCGGCGATGCCAGCGGGCGATGCCGCTGCAGTGGTGACGCCATCCGCCGGTATCGCAGCCGCC
TCTCCGGGCCGCTGCTGGATCGCATCGACCTGCACGTCGACGTGCCGCGCCTGCCGCCGCAGGCACTGCGCAGCGGTGCG
ACCGGCGAGGACAGTGCCAGCGTGCGCACACGCGTTGCCGCCGCACGCGAACGCCAGCAAGCACGTGCACAGGTGCCCAA
TGCCCGCCTGGACCAGGCCGCCACCGACCGCCACTGCCGGTTGGGCAATGACGATCAGCTGCTGCTGGAACGCGCCATCG
AACATCTGCAGCTGTCCGCACGGTCGATGCATCGCATTCTGCGCGTCTCGCGCACCATCGCCGATCTCGACGATAGCGCC
GACATCGCCACCCGTCACCTCACCGAAGCCATCGGCTACCGCAAACTCGACCGTGCCCTCGATACCTCCAGCGCCGCATG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.534

100

0.555
  comM Haemophilus influenzae Rd KW20

54.314

100

0.547
  comM Vibrio campbellii strain DS40M4

53.906

100

0.545
  comM Glaesserella parasuis strain SC1401

54.348

100

0.543
  comM Legionella pneumophila str. Paris

53.293

99.012

0.528
  comM Legionella pneumophila strain ERS1305867

53.293

99.012

0.528
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.443

100

0.464

Multiple sequence alignment