MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 152011 bp
Accession: NZ_LR740777 Location: 1..152011 Organism: Escherichia coli strain BEN2908 isolate Replicon: 1 day old chicken plasmid pAPEC2908
Accession: NZ_LR740777 Location: 1..152011 Organism: Escherichia coli strain BEN2908 isolate Replicon: 1 day old chicken plasmid pAPEC2908
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| APEC2908_RS24755 () | 638..1051 | - | 414 | Protein_0 | phosphopyruvate hydratase | - |
| APEC2908_RS24760 () | 1049..1305 | + | 257 | Protein_1 | Tn3 family transposase | - |
| APEC2908_RS24765 () | 1536..2376 | - | 841 | Protein_2 | hypothetical protein | ARG |
| APEC2908_RS24770 () | 2373..3223 | - | 851 | Protein_3 | iron/manganese ABC transporter permease subunit SitC | - |
| APEC2908_RS24775 () | 3264..4040 | - | 777 | Protein_4 | Vitamin B12 import ATP-binding protein BtuD | VF |
| APEC2908_RS24780 () | 4043..4957 | - | 915 | WP_000949004.1 | putative periplasmic iron-binding protein | VF |
| APEC2908_RS24785 () | 5310..6001 | + | 692 | Protein_6 | IS1 family transposase | - |
| APEC2908_RS24790 () | 6712..7688 | + | 977 | Protein_7 | replication initiation protein | - |
| APEC2908_RS24795 () | 7978..8712 | - | 735 | WP_161476329.1 | tyrosine-type recombinase/integrase | - |
| APEC2908_RS24800 () | 8833..9021 | - | 189 | WP_001312821.1 | hypothetical protein | - |
| APEC2908_RS24805 () | 9396..10298 | - | 903 | WP_001312822.1 | hypothetical protein | VF |
| APEC2908_RS24810 () | 10367..11476 | - | 1110 | WP_000771476.1 | SDR family oxidoreductase | - |
| APEC2908_RS24815 () | 11909..12862 | - | 954 | WP_000280979.1 | Protease 7 | VF |
| APEC2908_RS24820 () | 13142..13351 | + | 210 | WP_162541872.1 | hypothetical protein | - |
| APEC2908_RS24825 () | 14134..14292 | - | 159 | WP_001312823.1 | integrase core domain-containing protein | - |
| APEC2908_RS24830 () | 14524..14849 | - | 326 | Protein_15 | IS3 family transposase ISLad1 | Transposase |
| APEC2908_RS24835 () | 14948..16456 | - | 1509 | Protein_16 | group II intron reverse transcriptase/maturase | - |
| APEC2908_RS24840 () | 16495..16761 | - | 267 | WP_161476330.1 | hypothetical protein | - |
| APEC2908_RS24845 () | 18092..19279 | + | 1188 | WP_000928805.1 | efflux RND transporter periplasmic adaptor subunit | - |
| APEC2908_RS24850 () | 19276..21216 | + | 1941 | WP_000733250.1 | Macrolide export ATP-binding/permease protein MacB | VF |
| APEC2908_RS24855 () | 21220..22590 | + | 1371 | WP_001318212.1 | efflux transporter outer membrane subunit | - |
| APEC2908_RS24860 () | 23002..23699 | - | 698 | Protein_21 | IS1 family transposase IS1X4 | Transposase |
| APEC2908_RS24865 () | 23841..24035 | + | 195 | Protein_22 | IS200-IS605 family transposase IS200C | Transposase |
| APEC2908_RS24870 () | 24164..25105 | - | 942 | WP_000974761.1 | hypothetical protein | - |
| APEC2908_RS24875 () | 25340..26729 | - | 1390 | Protein_24 | ISNCY family transposase ISKpn21 | Transposase |
| APEC2908_RS24880 () | 27041..27190 | - | 150 | Protein_25 | IS3 family transposase IS2 | Transposase |
| APEC2908_RS24885 () | 27368..28561 | - | 1194 | WP_000450493.1 | GTP-binding protein | - |
| APEC2908_RS24895 () | 30953..31246 | + | 294 | WP_000738422.1 | increased serum survival lipoprotein Iss | - |
| APEC2908_RS24900 () | 31304..31445 | - | 142 | Protein_29 | lysis protein | - |
| APEC2908_RS24905 () | 32056..33155 | + | 1100 | Protein_30 | IS481 family transposase ISKpn28 | Transposase |
| APEC2908_RS24910 () | 34391..35506 | + | 1116 | WP_001298145.1 | Elloramycin glycosyltransferase ElmGT | VF |
| APEC2908_RS24915 () | 35646..39305 | + | 3660 | WP_001442133.1 | Multidrug efflux ATP-binding/permease protein | VF |
| APEC2908_RS24920 () | 39409..40638 | + | 1230 | WP_000933675.1 | Enterochelin esterase | VF |
| APEC2908_RS24925 () | 40723..41679 | + | 957 | WP_000271277.1 | hypothetical protein | VF |
| APEC2908_RS24930 () | 41724..43901 | - | 2178 | WP_074400466.1 | Ferric enterobactin receptor | VF |
| APEC2908_RS24935 () | 44112..45679 | - | 1568 | Protein_36 | IS66 family transposase | - |
| APEC2908_RS24940 () | 45699..46042 | - | 344 | Protein_37 | IS66 family insertion sequence element accessory protein TnpB | - |
| APEC2908_RS24945 () | 46047..46667 | - | 621 | Protein_38 | transposase | - |
| APEC2908_RS24950 () | 46886..47227 | - | 342 | WP_161476332.1 | IS66 family transposase ISEc8 | Transposase |
| APEC2908_RS24955 () | 47224..47613 | - | 390 | WP_001282151.1 | IS66 family transposase ISEc8 | Transposase |
| APEC2908_RS24960 () | 47680..48660 | - | 981 | WP_001017347.1 | NAD(P)-binding domain-containing protein | - |
| APEC2908_RS24965 () | 48657..48926 | - | 270 | WP_000379710.1 | SemiSWEET transporter | - |
| APEC2908_RS24970 () | 48928..49705 | - | 778 | Protein_43 | Gfo/Idh/MocA family oxidoreductase | - |
| APEC2908_RS24975 () | 49866..50102 | + | 237 | WP_001323890.1 | colicin V immunity protein | - |
| APEC2908_RS24980 () | 50080..50391 | + | 312 | WP_001259758.1 | colicin V | - |
| APEC2908_RS24985 () | 50561..52675 | - | 2115 | WP_161476333.1 | peptidase domain-containing ABC transporter | - |
| APEC2908_RS24990 () | 52650..53924 | - | 1275 | WP_000489608.1 | HlyD family secretion protein | - |
| APEC2908_RS24995 () | 54606..54803 | + | 198 | WP_001324224.1 | toxin-antitoxin system protein | Antitoxin Detail |
| APEC2908_RS25000 () | 54800..54982 | + | 183 | WP_000969988.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| APEC2908_RS25005 () | 55081..55389 | + | 309 | WP_000377483.1 | hypothetical protein | - |
| APEC2908_RS25010 () | 55949..56983 | + | 1035 | WP_001190233.1 | 3-deoxy-7-phosphoheptulonate synthase | - |
| APEC2908_RS25015 () | 57708..58384 | + | 677 | Protein_52 | IS66 family transposase ISCro1 | Transposase |
| APEC2908_RS25020 () | 58384..58730 | + | 347 | Protein_53 | IS66 family insertion sequence element accessory protein TnpB | - |
| APEC2908_RS25025 () | 58750..60313 | + | 1564 | Protein_54 | IS66 family transposase ISCro1 | Transposase |
| APEC2908_RS25030 () | 60461..61318 | - | 858 | WP_161476334.1 | incFII family plasmid replication initiator RepA | - |
| APEC2908_RS25035 () | 61311..61793 | - | 483 | WP_001273588.1 | hypothetical protein | - |
| APEC2908_RS25040 () | 61786..61860 | - | 75 | WP_001442103.1 | RepA leader peptide Tap | - |
| APEC2908_RS25045 () | 62092..62349 | - | 258 | WP_000083845.1 | replication regulatory protein RepA | - |
| APEC2908_RS25050 () | 62633..62839 | - | 207 | WP_001351576.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 62826..62887 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - () | 62826..62887 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - () | 62826..62887 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - () | 62826..62887 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| APEC2908_RS25055 () | 63143..63217 | - | 75 | Protein_60 | endonuclease | - |
| APEC2908_RS25060 () | 63463..63675 | - | 213 | WP_001299730.1 | ANR family transcriptional regulator | - |
| APEC2908_RS25065 () | 63811..64371 | - | 561 | WP_000139315.1 | fertility inhibition protein FinO | - |
| APEC2908_RS25070 () | 64474..65334 | - | 861 | WP_000704513.1 | Quorum-quenching protein AidA | VF |
| APEC2908_RS25075 () | 65393..66139 | - | 747 | WP_021512286.1 | conjugal transfer pilus acetylase TraX | - |
| APEC2908_RS25080 () | 66159..71429 | - | 5271 | WP_161476335.1 | Multifunctional conjugation protein TraI | Relaxase |
| APEC2908_RS25085 () | 71511..71738 | + | 228 | WP_000450520.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| APEC2908_RS25090 () | 71738..72136 | + | 399 | WP_000911333.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| APEC2908_RS25095 () | 72145..74298 | - | 2154 | WP_000009379.1 | type IV conjugative transfer system coupling protein TraD | - |
| APEC2908_RS25100 () | 74551..75282 | - | 732 | WP_000850416.1 | complement resistance protein TraT | - |
| APEC2908_RS25105 () | 75296..75805 | - | 510 | WP_000628105.1 | conjugal transfer entry exclusion protein TraS | - |
| APEC2908_RS25110 () | 75802..78627 | - | 2826 | WP_161476336.1 | conjugal transfer mating pair stabilization protein TraG | - |
| APEC2908_RS25115 () | 78624..79997 | - | 1374 | WP_000944319.1 | conjugal transfer protein TraH | - |
| APEC2908_RS25120 () | 80363..80704 | - | 342 | WP_071833523.1 | P-type conjugative transfer protein TrbJ | - |
| APEC2908_RS25125 () | 80634..81179 | - | 546 | WP_021512271.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| APEC2908_RS25130 () | 81166..81450 | - | 285 | WP_000624108.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| APEC2908_RS25135 () | 81531..81806 | + | 276 | WP_001513501.1 | hypothetical protein | - |
| APEC2908_RS25140 () | 81808..82155 | - | 348 | WP_001287907.1 | conjugal transfer protein TrbA | - |
| APEC2908_RS25145 () | 82171..82914 | - | 744 | WP_001030378.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| APEC2908_RS25150 () | 82907..83164 | - | 258 | WP_000864318.1 | conjugal transfer protein TrbE | - |
| APEC2908_RS25155 () | 83191..84999 | - | 1809 | WP_161476337.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| APEC2908_RS25160 () | 84996..85634 | - | 639 | WP_000777703.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| APEC2908_RS25165 () | 85643..86635 | - | 993 | WP_000830183.1 | conjugal transfer pilus assembly protein TraU | - |
| APEC2908_RS25170 () | 86632..87264 | - | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| APEC2908_RS25175 () | 87261..87647 | - | 387 | WP_000099688.1 | type-F conjugative transfer system protein TrbI | - |
| APEC2908_RS25180 () | 87644..90271 | - | 2628 | WP_001064245.1 | type IV secretion system protein TraC | - |
| APEC2908_RS25185 () | 90431..90652 | - | 222 | WP_001278690.1 | conjugal transfer protein TraR | - |
| APEC2908_RS25190 () | 90787..91302 | - | 516 | WP_000809834.1 | type IV conjugative transfer system lipoprotein TraV | - |
| APEC2908_RS25195 () | 91299..91550 | - | 252 | WP_001038351.1 | conjugal transfer protein TrbG | - |
| APEC2908_RS25200 () | 91594..91980 | + | 387 | Protein_89 | hypothetical protein | VF |
| APEC2908_RS25205 () | 92276..93097 | - | 822 | WP_001234485.1 | DUF945 domain-containing protein | - |
| APEC2908_RS25210 () | 93276..93888 | + | 613 | Protein_91 | hypothetical protein | - |
| APEC2908_RS25215 () | 94126..94287 | - | 162 | WP_001332444.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 94340..94551 | - | 212 | NuclAT_0 | - | Antitoxin Detail |
| - () | 94340..94551 | - | 212 | NuclAT_0 | - | Antitoxin Detail |
| - () | 94340..94551 | - | 212 | NuclAT_0 | - | Antitoxin Detail |
| - () | 94340..94551 | - | 212 | NuclAT_0 | - | Antitoxin Detail |
| APEC2908_RS25220 () | 94562..95281 | - | 720 | WP_001276275.1 | plasmid SOS inhibition protein A | - |
| APEC2908_RS25225 () | 95278..95712 | - | 435 | WP_000845935.1 | conjugation system SOS inhibitor PsiB | - |
| APEC2908_RS25230 () | 95767..97725 | - | 1959 | Protein_95 | ParB/RepB/Spo0J family partition protein | - |
| APEC2908_RS25235 () | 97784..98017 | - | 234 | WP_001209608.1 | DUF905 domain-containing protein | - |
| APEC2908_RS25240 () | 98080..98619 | - | 540 | WP_161476342.1 | single-stranded DNA-binding protein | - |
| APEC2908_RS25245 () | 99224..99921 | + | 698 | Protein_98 | IS1 family transposase IS1S | Transposase |
| APEC2908_RS25250 () | 99978..101201 | - | 1224 | WP_161476338.1 | tyrosine-type recombinase/integrase | - |
| APEC2908_RS25255 () | 101278..102188 | - | 911 | Protein_100 | hypothetical protein | - |
| APEC2908_RS25260 () | 102185..103183 | - | 999 | WP_000549075.1 | IS91 family transposase ISMno24 | Transposase |
| APEC2908_RS25265 () | 103246..104391 | + | 1146 | Protein_102 | translesion error-prone DNA polymerase V subunit UmuC | - |
| APEC2908_RS25270 () | 104528..105499 | - | 972 | WP_001233385.1 | ParB/RepB/Spo0J family partition protein | - |
| APEC2908_RS25275 () | 105496..106701 | - | 1206 | WP_001442122.1 | Plasmid partition protein A | VF |
| APEC2908_RS25280 () | 107323..108054 | + | 732 | WP_000504262.1 | replication initiation protein | - |
| APEC2908_RS25285 () | 108734..109540 | - | 807 | WP_000016968.1 | site-specific integrase | - |
| APEC2908_RS25290 () | 109541..109846 | - | 306 | WP_001159871.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| APEC2908_RS25295 () | 109848..110066 | - | 219 | WP_000813630.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| APEC2908_RS25300 () | 110632..111144 | + | 513 | WP_000151784.1 | hypothetical protein | - |
| APEC2908_RS25305 () | 111178..112311 | - | 1134 | WP_000545987.1 | DUF3800 domain-containing protein | - |
| APEC2908_RS25310 () | 112478..113251 | - | 774 | WP_000905949.1 | hypothetical protein | - |
| APEC2908_RS25315 () | 113264..113764 | - | 501 | WP_000528932.1 | hypothetical protein | - |
| APEC2908_RS25320 () | 114029..114259 | + | 231 | WP_001261278.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| APEC2908_RS25325 () | 114256..114672 | + | 417 | WP_001034046.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| APEC2908_RS25330 () | 114717..117809 | - | 3093 | Protein_115 | pcar | - |
| APEC2908_RS25335 () | 117865..118562 | + | 698 | Protein_116 | IS1 family transposase IS1S | Transposase |
| APEC2908_RS25340 () | 118497..118919 | - | 423 | WP_161476339.1 | hypothetical protein | - |
| APEC2908_RS25345 () | 119300..119530 | + | 231 | WP_001261286.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| APEC2908_RS25350 () | 119527..119943 | + | 417 | WP_001034044.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| APEC2908_RS25355 () | 120018..121583 | + | 1566 | WP_001128474.1 | AAA family ATPase | - |
| APEC2908_RS25360 () | 121568..122590 | + | 1023 | WP_000361402.1 | helicase UvrD | - |
| APEC2908_RS25365 () | 122844..123540 | - | 697 | Protein_122 | IS1 family transposase | - |
| APEC2908_RS25370 () | 123920..126121 | - | 2202 | WP_000973519.1 | Ferric aerobactin receptor | VF |
| APEC2908_RS25375 () | 126203..127480 | - | 1278 | WP_000750130.1 | L-lysine N6-monooxygenase | VF |
| APEC2908_RS25380 () | 127477..129219 | - | 1743 | WP_001015721.1 | Aerobactin synthase | VF |
| APEC2908_RS25385 () | 129219..130166 | - | 948 | WP_000011908.1 | N(6)-hydroxylysine O-acetyltransferase | VF |
| APEC2908_RS25390 () | 130167..131891 | - | 1725 | WP_000602863.1 | N(2)-citryl-N(6)-acetyl-N(6)-hydroxylysine synthase | VF |
| APEC2908_RS25395 () | 132027..133220 | + | 1194 | WP_000095528.1 | MFS transporter | - |
| APEC2908_RS25400 () | 133600..133980 | - | 381 | WP_001318207.1 | fluoride efflux transporter CrcB | - |
| APEC2908_RS25405 () | 134321..134734 | - | 414 | Protein_130 | phosphopyruvate hydratase | - |
| APEC2908_RS25410 () | 134732..134989 | + | 258 | Protein_131 | Tn3 family transposase | - |
| APEC2908_RS25415 () | 135223..136080 | - | 858 | WP_000968139.1 | Manganese transport system membrane protein MntB | ARG |
| APEC2908_RS25420 () | 136077..136934 | - | 858 | WP_001531616.1 | Manganese transport system membrane protein MntB | ARG |
| APEC2908_RS25425 () | 136931..137755 | - | 825 | WP_161476340.1 | Manganese transport system ATP-binding protein MntB | VF |
| APEC2908_RS25430 () | 137755..138666 | - | 912 | Protein_135 | putative periplasmic iron-binding protein | VF |
| APEC2908_RS25435 () | 139022..139719 | + | 698 | Protein_136 | IS1 family transposase IS1S | Transposase |
| APEC2908_RS25440 () | 140430..141400 | + | 971 | Protein_137 | RepB family plasmid replication initiator protein | - |
| APEC2908_RS25445 () | 141685..142418 | - | 734 | Protein_138 | site-specific integrase | - |
| APEC2908_RS25450 () | 142538..142662 | - | 125 | Protein_139 | transcriptional regulator | - |
| APEC2908_RS25455 () | 143095..143991 | - | 897 | Protein_140 | antimicrobial resistance protein Mig-14 | - |
| APEC2908_RS25460 () | 144060..145168 | - | 1109 | Protein_141 | SDR family oxidoreductase | - |
| APEC2908_RS25465 () | 145595..146546 | - | 952 | Protein_142 | Protease 7 | VF |
| APEC2908_RS25470 () | 147819..147977 | - | 159 | WP_001312823.1 | integrase core domain-containing protein | - |
| APEC2908_RS25475 () | 148181..148530 | - | 350 | Protein_144 | IS3 family transposase ISLad1 | Transposase |
| APEC2908_RS25480 () | 148627..150126 | - | 1500 | Protein_145 | group II intron reverse transcriptase/maturase | - |
| APEC2908_RS25485 () | 151761..152011 | + | 251 | Protein_146 | efflux transporter periplasmic adaptor subunit | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|