MGE detailed information
MGE type: Genomic_island MGE length: 11674 bp
Accession: NZ_CP123237 Location: 605704..617377 Organism: Escherichia coli strain 4588 Replicon: chromosome
Accession: NZ_CP123237 Location: 605704..617377 Organism: Escherichia coli strain 4588 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QET42_RS02930 (600705) | 600705..601139 | - | 435 | WP_000948824.1 | PTS galactosamine/N-acetylgalactosamine transporter subunit IIA | - |
| QET42_RS02935 (601157) | 601157..602035 | - | 879 | WP_001300474.1 | PTS N-acetylgalactosamine transporter subunit IID | - |
| QET42_RS02940 (602025) | 602025..602804 | - | 780 | WP_000406214.1 | PTS N-acetylgalactosamine transporter subunit IIC | - |
| QET42_RS02945 (602815) | 602815..603288 | - | 474 | WP_001295547.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| QET42_RS02950 (603311) | 603311..604591 | - | 1281 | WP_000681903.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| QET42_RS02955 (604840) | 604840..605649 | + | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| QET42_RS02960 (605704) | 605704..606168 | - | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| QET42_RS02965 (606168) | 606168..606503 | - | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| QET42_RS02970 (606652) | 606652..608223 | - | 1572 | WP_001723936.1 | galactarate dehydratase | - |
| QET42_RS02975 (608598) | 608598..609932 | + | 1335 | WP_001723935.1 | galactarate/glucarate/glycerate transporter GarP | - |
| QET42_RS02980 (609948) | 609948..610718 | + | 771 | WP_001723934.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| QET42_RS02985 (610748) | 610748..611638 | + | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| QET42_RS02990 (611735) | 611735..612880 | + | 1146 | WP_001424370.1 | glycerate 2-kinase | - |
| QET42_RS03000 (613903) | 613903..615091 | - | 1189 | Protein_586 | YhaC family protein | - |
| QET42_RS03005 (615113) | 615113..615651 | - | 539 | Protein_587 | protein YhaB | - |
| QET42_RS03010 (615907) | 615907..616125 | - | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| QET42_RS03015 (616439) | 616439..617377 | + | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| QET42_RS03020 (617476) | 617476..618465 | + | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| QET42_RS03025 (618487) | 618487..619818 | + | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| QET42_RS03030 (619844) | 619844..621052 | + | 1209 | WP_001295545.1 | propionate kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.008 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.008 |