MGE detailed information
MGE type: Genomic_island MGE length: 11675 bp
Accession: NZ_CP122507 Location: 604474..616148 Organism: Escherichia coli strain W444 Replicon: chromosome
Accession: NZ_CP122507 Location: 604474..616148 Organism: Escherichia coli strain W444 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QC806_RS02930 (599475) | 599475..599909 | - | 435 | WP_000948824.1 | PTS galactosamine/N-acetylgalactosamine transporter subunit IIA | - |
| QC806_RS02935 (599927) | 599927..600805 | - | 879 | WP_001300474.1 | PTS N-acetylgalactosamine transporter subunit IID | - |
| QC806_RS02940 (600795) | 600795..601574 | - | 780 | WP_000406214.1 | PTS N-acetylgalactosamine transporter subunit IIC | - |
| QC806_RS02945 (601585) | 601585..602058 | - | 474 | WP_001295547.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| QC806_RS02950 (602081) | 602081..603361 | - | 1281 | WP_096178318.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| QC806_RS02955 (603610) | 603610..604419 | + | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| QC806_RS02960 (604474) | 604474..604938 | - | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| QC806_RS02965 (604938) | 604938..605273 | - | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| QC806_RS02970 (605422) | 605422..606993 | - | 1572 | WP_001723936.1 | galactarate dehydratase | - |
| QC806_RS02975 (607368) | 607368..608702 | + | 1335 | WP_001723935.1 | galactarate/glucarate/glycerate transporter GarP | - |
| QC806_RS02980 (608718) | 608718..609488 | + | 771 | WP_001723934.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| QC806_RS02985 (609518) | 609518..610408 | + | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| QC806_RS02990 (610505) | 610505..611650 | + | 1146 | WP_001424370.1 | glycerate 2-kinase | - |
| QC806_RS03000 (612673) | 612673..613860 | - | 1188 | WP_284631833.1 | YhaC family protein | - |
| QC806_RS03005 (613882) | 613882..614421 | - | 540 | WP_040061853.1 | protein YhaB | - |
| QC806_RS03010 (614677) | 614677..614895 | - | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| QC806_RS03015 (615210) | 615210..616148 | + | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| QC806_RS03020 (616247) | 616247..617236 | + | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| QC806_RS03025 (617258) | 617258..618589 | + | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| QC806_RS03030 (618615) | 618615..619823 | + | 1209 | WP_001295545.1 | propionate kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.008 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.008 |