MGE detailed information
MGE type: Conjugative plasmid MGE length: 122293 bp
Accession: NZ_CP117958 Location: 1..122293 Organism: Escherichia coli strain B-2207 Replicon: plasmid unnamed1
Accession: NZ_CP117958 Location: 1..122293 Organism: Escherichia coli strain B-2207 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PT284_RS00010 (1735) | 1735..2490 | - | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| PT284_RS00015 (3264) | 3264..4070 | - | 807 | WP_000016982.1 | site-specific integrase | - |
| PT284_RS00020 (4071) | 4071..4376 | - | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| PT284_RS00025 (4378) | 4378..4596 | - | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| PT284_RS00030 (5188) | 5188..5676 | + | 489 | WP_011254646.1 | hypothetical protein | - |
| PT284_RS00035 (5710) | 5710..6843 | - | 1134 | WP_000545987.1 | DUF3800 domain-containing protein | - |
| PT284_RS00040 (7010) | 7010..7783 | - | 774 | WP_000905949.1 | hypothetical protein | - |
| PT284_RS00045 (7796) | 7796..8296 | - | 501 | WP_102360530.1 | HEPN family nuclease | - |
| PT284_RS00050 (8561) | 8561..8791 | + | 231 | WP_001261286.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| PT284_RS00055 (8788) | 8788..9204 | + | 417 | WP_001034044.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| PT284_RS00060 (9279) | 9279..10844 | + | 1566 | WP_001128474.1 | AAA family ATPase | - |
| PT284_RS00065 (10829) | 10829..11851 | + | 1023 | WP_000361402.1 | helicase UvrD | - |
| PT284_RS00075 (13158) | 13158..14072 | + | 915 | WP_000949004.1 | putative periplasmic iron-binding protein | VF |
| PT284_RS00080 (14072) | 14072..14899 | + | 828 | WP_000983710.1 | Manganese transport system ATP-binding protein MntB | VF |
| PT284_RS00085 (14896) | 14896..15753 | + | 858 | WP_001101723.1 | Manganese transport system membrane protein MntB | ARG |
| PT284_RS00090 (15750) | 15750..16607 | + | 858 | WP_000968139.1 | Manganese transport system membrane protein MntB | ARG |
| PT284_RS00095 (16841) | 16841..17098 | - | 258 | Protein_18 | Tn3 family transposase | - |
| PT284_RS00100 (17096) | 17096..17509 | + | 414 | Protein_19 | phosphopyruvate hydratase | - |
| PT284_RS00105 (17850) | 17850..18230 | + | 381 | WP_001318207.1 | fluoride efflux transporter CrcB | - |
| PT284_RS00110 (18610) | 18610..19803 | - | 1194 | WP_000095526.1 | MFS transporter | - |
| PT284_RS00115 (19939) | 19939..21663 | + | 1725 | WP_000602863.1 | N(2)-citryl-N(6)-acetyl-N(6)-hydroxylysine synthase | VF |
| PT284_RS00120 (21664) | 21664..22610 | + | 947 | Protein_23 | N(6)-hydroxylysine O-acetyltransferase | VF |
| PT284_RS00125 (22610) | 22610..24352 | + | 1743 | WP_001015721.1 | Aerobactin synthase | VF |
| PT284_RS00130 (24349) | 24349..25682 | + | 1334 | Protein_25 | L-lysine N6-monooxygenase | VF |
| PT284_RS00135 (25708) | 25708..27909 | + | 2202 | WP_000973519.1 | Ferric aerobactin receptor | VF |
| PT284_RS00140 (28289) | 28289..28986 | + | 698 | WP_223155668.1 | IS1 family transposase IS1S | Transposase |
| PT284_RS00145 (29166) | 29166..29679 | - | 514 | Protein_28 | DUF4113 domain-containing protein | - |
| PT284_RS00150 (29740) | 29740..29844 | - | 105 | Protein_29 | AAA family ATPase | - |
| PT284_RS00155 (29846) | 29846..30169 | - | 324 | Protein_30 | IS21 family transposase IS21 | Transposase |
| PT284_RS00160 (30915) | 30915..31892 | + | 978 | WP_000361611.1 | RepB family plasmid replication initiator protein | - |
| PT284_RS00165 (32177) | 32177..32917 | - | 741 | WP_001066953.1 | tyrosine-type recombinase/integrase | - |
| PT284_RS00170 (33038) | 33038..33220 | - | 183 | WP_042344623.1 | hypothetical protein | - |
| PT284_RS00175 (33287) | 33287..33576 | - | 290 | Protein_34 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| PT284_RS00180 (33563) | 33563..33831 | - | 269 | Protein_35 | type II toxin-antitoxin system ParD family antitoxin | - |
| PT284_RS00185 (34363) | 34363..35532 | + | 1170 | WP_001072355.1 | hypothetical protein | - |
| PT284_RS00190 (35565) | 35565..35693 | + | 129 | Protein_37 | IS481 family transposase | - |
| PT284_RS00195 (35818) | 35818..36021 | - | 204 | Protein_38 | hypothetical protein | - |
| PT284_RS00200 (36127) | 36127..36402 | - | 276 | WP_000421272.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PT284_RS00205 (36402) | 36402..36686 | - | 285 | WP_102360527.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| PT284_RS00210 (37291) | 37291..38043 | + | 753 | WP_001403368.1 | IclR family transcriptional regulator | - |
| PT284_RS00215 (38089) | 38089..39054 | - | 966 | WP_001022265.1 | 2-keto-3-deoxygluconate transporter | - |
| PT284_RS00220 (39087) | 39087..39467 | - | 381 | WP_000710783.1 | Rid family detoxifying hydrolase | - |
| PT284_RS00225 (39640) | 39640..40518 | + | 879 | WP_000338039.1 | sugar ABC transporter permease | - |
| PT284_RS00230 (40508) | 40508..41395 | + | 888 | WP_001271561.1 | carbohydrate ABC transporter permease | - |
| PT284_RS00235 (41406) | 41406..42230 | + | 825 | WP_000922702.1 | phosphodiesterase | - |
| PT284_RS00240 (42236) | 42236..43309 | + | 1074 | WP_000950177.1 | sn-glycerol-3-phosphate import ATP-binding protein UgpC | VF |
| PT284_RS00245 (43302) | 43302..44612 | + | 1311 | WP_000476108.1 | ABC transporter substrate-binding protein | - |
| PT284_RS00250 (44671) | 44671..44979 | - | 309 | Protein_49 | IS4 family transposase ISEc13 | Transposase |
| PT284_RS00255 (45056) | 45056..45229 | - | 174 | WP_000338295.1 | Tn3 family transposase ISPsy39 | Transposase |
| PT284_RS00260 (45311) | 45311..46524 | - | 1214 | Protein_51 | IS3 family transposase | - |
| PT284_RS00265 (46643) | 46643..46765 | - | 123 | Protein_52 | hypothetical protein | - |
| PT284_RS00270 (46998) | 46998..48176 | + | 1179 | WP_001403462.1 | MalY/PatB family protein | - |
| PT284_RS00275 (48169) | 48169..49620 | + | 1452 | WP_001403463.1 | Na+/H+ antiporter NhaC | - |
| PT284_RS00280 (49695) | 49695..49828 | - | 134 | Protein_55 | phosphate-starvation-inducible protein PsiE | - |
| PT284_RS00285 (49877) | 49877..51496 | - | 1620 | WP_072003777.1 | ISL3 family transposase ISEc38 | Transposase |
| PT284_RS00290 (51593) | 51593..51998 | + | 406 | Protein_57 | IS3 family transposase IS2 | Transposase |
| PT284_RS00295 (52089) | 52089..53317 | + | 1229 | Protein_58 | IS3 family transposase IS2 | Transposase |
| PT284_RS00300 (53512) | 53512..53691 | + | 180 | Protein_59 | polysaccharide deacetylase family protein | - |
| PT284_RS00305 (53698) | 53698..54078 | - | 381 | WP_032269702.1 | aspartate 1-decarboxylase | - |
| PT284_RS00310 (54351) | 54351..54482 | + | 132 | Protein_61 | Rpn family recombination-promoting nuclease/putative transposase | - |
| PT284_RS00315 (54680) | 54680..56075 | + | 1396 | Protein_62 | MFS transporter | - |
| PT284_RS00320 (56181) | 56181..57212 | + | 1032 | WP_102360525.1 | LacI family DNA-binding transcriptional regulator | - |
| PT284_RS00325 (57187) | 57187..58206 | + | 1020 | WP_024200979.1 | nucleoside hydrolase | - |
| PT284_RS00330 (58270) | 58270..58983 | + | 714 | WP_032269703.1 | Protein SapB | VF |
| PT284_RS00335 (59140) | 59140..59379 | - | 240 | Protein_66 | IS4 family transposase | - |
| PT284_RS00340 (59672) | 59672..60694 | - | 1023 | WP_032269704.1 | IS110 family transposase IS1618 | Transposase |
| PT284_RS00345 (60854) | 60854..61312 | - | 459 | WP_001236004.1 | hypothetical protein | - |
| PT284_RS00350 (61453) | 61453..62292 | - | 840 | WP_001402900.1 | 3'-5' exonuclease | - |
| PT284_RS00355 (62338) | 62338..62616 | - | 279 | WP_244448951.1 | type II toxin-antitoxin system toxin YacB | Toxin Detail |
| PT284_RS00360 (62616) | 62616..62885 | - | 270 | WP_000079941.1 | type II toxin-antitoxin system antitoxin YacA | Antitoxin Detail |
| PT284_RS00365 (63631) | 63631..64377 | - | 747 | Protein_72 | IS21-like element ISEc12 family helper ATPase IstB | - |
| PT284_RS00370 (64392) | 64392..65165 | - | 774 | Protein_73 | IS21 family transposase ISEc12 | Transposase |
| PT284_RS00375 (65231) | 65231..66577 | + | 1347 | WP_274270680.1 | IS4 family transposase IS4 | Transposase |
| PT284_RS00380 (66592) | 66592..67371 | - | 780 | Protein_75 | IS21 family transposase ISEc12 | Transposase |
| PT284_RS00385 (67824) | 67824..68681 | - | 858 | WP_032265352.1 | incFII family plasmid replication initiator RepA | - |
| PT284_RS00390 (68674) | 68674..68748 | - | 75 | WP_031943482.1 | RepA leader peptide Tap | - |
| PT284_RS00395 (68985) | 68985..69239 | - | 255 | WP_102360536.1 | replication regulatory protein RepA | - |
| PT284_RS00400 (69536) | 69536..69670 | - | 135 | WP_023144756.1 | Hok/Gef family protein | Toxin Detail |
| - (69716) | 69716..69767 | + | 52 | NuclAT_1 | - | - |
| - (69716) | 69716..69767 | + | 52 | NuclAT_1 | - | - |
| - (69716) | 69716..69767 | + | 52 | NuclAT_1 | - | - |
| - (69716) | 69716..69767 | + | 52 | NuclAT_1 | - | - |
| PT284_RS00405 (69734) | 69734..70020 | - | 287 | Protein_80 | DUF2726 domain-containing protein | - |
| PT284_RS00410 (70533) | 70533..70745 | - | 213 | WP_013023861.1 | hypothetical protein | - |
| PT284_RS00415 (70876) | 70876..71437 | - | 562 | Protein_82 | fertility inhibition protein FinO | - |
| PT284_RS00420 (71492) | 71492..72238 | - | 747 | WP_000205718.1 | conjugal transfer pilus acetylase TraX | - |
| PT284_RS00425 (72258) | 72258..77528 | - | 5271 | Protein_84 | Multifunctional conjugation protein TraI | Relaxase |
| PT284_RS00430 (77528) | 77528..79735 | - | 2208 | WP_102360535.1 | type IV conjugative transfer system coupling protein TraD | - |
| PT284_RS00435 (80017) | 80017..80628 | - | 612 | WP_000908442.1 | hypothetical protein | - |
| PT284_RS00440 (80700) | 80700..81431 | - | 732 | WP_001403424.1 | conjugal transfer complement resistance protein TraT | - |
| PT284_RS00445 (81480) | 81480..81965 | - | 486 | WP_077513832.1 | surface exclusion protein | - |
| PT284_RS00450 (81981) | 81981..84803 | - | 2823 | WP_102360534.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| PT284_RS00455 (84800) | 84800..86175 | - | 1376 | Protein_90 | conjugal transfer protein TraH | - |
| PT284_RS00460 (86162) | 86162..86554 | - | 393 | WP_000659962.1 | F-type conjugal transfer protein TrbF | - |
| PT284_RS00465 (86535) | 86535..86882 | - | 348 | WP_071571857.1 | P-type conjugative transfer protein TrbJ | - |
| PT284_RS00470 (86812) | 86812..87357 | - | 546 | WP_274270684.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| PT284_RS00475 (87344) | 87344..87628 | - | 285 | WP_001617873.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| PT284_RS00480 (87755) | 87755..88093 | - | 339 | WP_001287905.1 | conjugal transfer protein TrbA | - |
| PT284_RS00485 (88109) | 88109..88852 | - | 744 | WP_001403429.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| PT284_RS00490 (88845) | 88845..89102 | - | 258 | WP_000864347.1 | conjugal transfer protein TrbE | - |
| PT284_RS00495 (89129) | 89129..90979 | - | 1851 | WP_102360533.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| PT284_RS00500 (90976) | 90976..91614 | - | 639 | WP_001080259.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| PT284_RS00505 (91623) | 91623..91928 | - | 306 | WP_000224413.1 | hypothetical protein | - |
| PT284_RS00510 (91958) | 91958..92950 | - | 993 | WP_102360532.1 | conjugal transfer pilus assembly protein TraU | - |
| PT284_RS00515 (92947) | 92947..93579 | - | 633 | WP_001203727.1 | type-F conjugative transfer system protein TraW | - |
| PT284_RS00520 (93576) | 93576..93962 | - | 387 | WP_000214084.1 | type-F conjugative transfer system protein TrbI | - |
| PT284_RS00525 (93959) | 93959..96586 | - | 2628 | WP_102360531.1 | type IV secretion system protein TraC | - |
| PT284_RS00530 (96746) | 96746..96967 | - | 222 | WP_001278694.1 | conjugal transfer protein TraR | - |
| PT284_RS00535 (97102) | 97102..97617 | - | 516 | WP_001403433.1 | type IV conjugative transfer system lipoprotein TraV | - |
| PT284_RS00540 (97617) | 97617..97928 | - | 312 | WP_001057272.1 | conjugal transfer protein TrbD | - |
| PT284_RS00545 (97915) | 97915..98481 | - | 567 | WP_000896601.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| PT284_RS00550 (98471) | 98471..99922 | - | 1452 | WP_000146647.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| PT284_RS00555 (99922) | 99922..100650 | - | 729 | WP_001230809.1 | type-F conjugative transfer system secretin TraK | - |
| PT284_RS00560 (100637) | 100637..101203 | - | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| PT284_RS00565 (101225) | 101225..101536 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| PT284_RS00570 (101541) | 101541..101903 | - | 363 | WP_000338606.1 | type IV conjugative transfer system pilin TraA | - |
| PT284_RS00575 (101937) | 101937..102164 | - | 228 | WP_001254388.1 | conjugal transfer relaxosome protein TraY | - |
| PT284_RS00580 (102252) | 102252..102929 | - | 678 | WP_001348626.1 | PAS domain-containing protein | - |
| PT284_RS00585 (103063) | 103063..103446 | - | 384 | WP_001151566.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| PT284_RS00590 (103777) | 103777..104379 | + | 603 | WP_000243712.1 | hypothetical protein | VF |
| PT284_RS00595 (104676) | 104676..105497 | - | 822 | WP_001234469.1 | DUF932 domain-containing protein | - |
| PT284_RS00600 (105617) | 105617..105904 | - | 288 | WP_021528457.1 | hypothetical protein | - |
| PT284_RS00605 (105929) | 105929..106135 | - | 207 | WP_000547968.1 | hypothetical protein | - |
| PT284_RS00610 (106205) | 106205..106378 | + | 174 | Protein_121 | hypothetical protein | - |
| PT284_RS00615 (106376) | 106376..106606 | - | 231 | WP_001426396.1 | hypothetical protein | - |
| PT284_RS00620 (106826) | 106826..106951 | - | 126 | WP_001372321.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| PT284_RS00625 (106893) | 106893..107042 | - | 150 | Protein_124 | plasmid maintenance protein Mok | - |
| - (107028) | 107028..107252 | - | 225 | NuclAT_0 | - | - |
| - (107028) | 107028..107252 | - | 225 | NuclAT_0 | - | - |
| - (107028) | 107028..107252 | - | 225 | NuclAT_0 | - | - |
| - (107028) | 107028..107252 | - | 225 | NuclAT_0 | - | - |
| PT284_RS00630 (107064) | 107064..107252 | + | 189 | WP_001299721.1 | hypothetical protein | - |
| PT284_RS00635 (107221) | 107221..107983 | - | 763 | Protein_126 | plasmid SOS inhibition protein A | - |
| PT284_RS00640 (107980) | 107980..108414 | - | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| PT284_RS00645 (108469) | 108469..110427 | - | 1959 | WP_021528456.1 | ParB/RepB/Spo0J family partition protein | - |
| PT284_RS00650 (110493) | 110493..110726 | - | 234 | WP_000005990.1 | DUF905 family protein | - |
| PT284_RS00655 (110789) | 110789..111328 | - | 540 | WP_000290839.1 | single-stranded DNA-binding protein | - |
| PT284_RS00660 (111354) | 111354..111560 | - | 207 | WP_000275853.1 | hypothetical protein | - |
| PT284_RS00665 (111799) | 111799..112032 | - | 234 | WP_102384970.1 | hypothetical protein | - |
| PT284_RS00670 (111969) | 111969..112157 | - | 189 | WP_102360578.1 | hypothetical protein | - |
| PT284_RS00675 (112183) | 112183..112746 | - | 564 | WP_001315564.1 | class I SAM-dependent methyltransferase | - |
| PT284_RS00680 (112794) | 112794..114155 | - | 1362 | WP_000199439.1 | DUF3560 domain-containing protein | - |
| PT284_RS00685 (114207) | 114207..114437 | - | 231 | WP_000218642.1 | hypothetical protein | - |
| PT284_RS00690 (115470) | 115470..115661 | - | 192 | WP_001027516.1 | hypothetical protein | - |
| PT284_RS00695 (115658) | 115658..116080 | - | 423 | WP_000271753.1 | DUF1380 family protein | - |
| PT284_RS00700 (116127) | 116127..116552 | - | 426 | WP_001198928.1 | antirestriction protein | - |
| PT284_RS00705 (116969) | 116969..117745 | - | 777 | WP_001753849.1 | hypothetical protein | - |
| PT284_RS00710 (117796) | 117796..118314 | - | 519 | WP_123325260.1 | DUF1380 family protein | - |
| PT284_RS00715 (118244) | 118244..118465 | - | 222 | WP_001104873.1 | hypothetical protein | - |
| PT284_RS00720 (118466) | 118466..119149 | - | 684 | WP_000086185.1 | DNA methylase | - |
| PT284_RS00725 (119226) | 119226..119537 | - | 312 | WP_011254640.1 | hypothetical protein | - |
| PT284_RS00730 (119534) | 119534..120436 | - | 903 | WP_001348615.1 | DUF1281 domain-containing protein | - |
| PT284_RS00735 (121303) | 121303..122274 | - | 972 | WP_000817035.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|