MGE detailed information
MGE type: Genomic_island MGE length: 9947 bp
Accession: NZ_CP116188 Location: 4150608..4160554 Organism: Escherichia coli strain DETEC-E223 Replicon: chromosome
Accession: NZ_CP116188 Location: 4150608..4160554 Organism: Escherichia coli strain DETEC-E223 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PIC88_RS20300 (4146441) | 4146441..4147772 | - | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| PIC88_RS20305 (4147794) | 4147794..4148783 | - | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| PIC88_RS20310 (4148882) | 4148882..4149820 | - | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| PIC88_RS20315 (4150134) | 4150134..4150352 | + | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| PIC88_RS20320 (4150608) | 4150608..4151146 | + | 539 | Protein_3978 | protein YhaB | - |
| PIC88_RS20325 (4151168) | 4151168..4152355 | + | 1188 | WP_024238569.1 | YhaC family protein | - |
| PIC88_RS20335 (4153378) | 4153378..4154523 | - | 1146 | WP_032298172.1 | glycerate 2-kinase | - |
| PIC88_RS20340 (4154620) | 4154620..4155510 | - | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| PIC88_RS20345 (4155540) | 4155540..4156310 | - | 771 | WP_048218026.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| PIC88_RS20350 (4156326) | 4156326..4157660 | - | 1335 | WP_001723935.1 | galactarate/glucarate/glycerate transporter GarP | - |
| PIC88_RS20355 (4158035) | 4158035..4159606 | + | 1572 | WP_001723936.1 | galactarate dehydratase | - |
| PIC88_RS20360 (4159755) | 4159755..4160090 | + | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| PIC88_RS20365 (4160090) | 4160090..4160554 | + | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| PIC88_RS20370 (4160609) | 4160609..4161418 | - | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| PIC88_RS20375 (4161667) | 4161667..4162947 | + | 1281 | WP_000681903.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| PIC88_RS20380 (4162970) | 4162970..4163443 | + | 474 | WP_001295547.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| PIC88_RS20385 (4163454) | 4163454..4164233 | + | 780 | WP_000406214.1 | PTS N-acetylgalactosamine transporter subunit IIC | - |
| PIC88_RS20390 (4164223) | 4164223..4165101 | + | 879 | WP_001300474.1 | PTS N-acetylgalactosamine transporter subunit IID | - |
| PIC88_RS20395 (4165119) | 4165119..4165553 | + | 435 | WP_000948824.1 | PTS galactosamine/N-acetylgalactosamine transporter subunit IIA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1047 | NC_000913 | 3267854..3277801 | 0.01 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22703 | NC_010473 | 3363621..3373568 | 0.01 | |
| Escherichia coli BW2952 | Genomic island | TA23871 | NC_012759 | 3153024..3162971 | 0.01 | |
| Escherichia coli DH1 | Genomic island | TA27421 | NC_017638 | 3245760..3255707 | 0.01 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29016 | NC_020518 | 2741187..2751134 | 0.01 | |
| Escherichia coli BW25113 | Genomic island | TA48700 | NZ_CP009273 | 3261213..3271160 | 0.01 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90495 | NZ_CP025520 | 2121277..2131224 | 0.01 |