MGE detailed information
MGE type: Prophage MGE length: 40359 bp
Accession: NZ_CP110999 Location: 2077964..2118322 Organism: Escherichia coli strain J53-p133 Replicon: chromosome
Accession: NZ_CP110999 Location: 2077964..2118322 Organism: Escherichia coli strain J53-p133 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ORI88_RS10060 (2073863) | 2073863..2075083 | + | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
| ORI88_RS10065 (2075208) | 2075208..2075903 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| ORI88_RS10070 (2075856) | 2075856..2077148 | - | 1293 | WP_071592181.1 | voltage-gated ClC-type chloride channel ClcB | - |
| ORI88_RS10075 (2077307) | 2077307..2077921 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| ORI88_RS10080 (2077964) | 2077964..2078818 | - | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| ORI88_RS10085 (2078820) | 2078820..2079437 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| ORI88_RS10090 (2079448) | 2079448..2081871 | - | 2424 | WP_001340362.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| ORI88_RS10095 (2081932) | 2081932..2084358 | - | 2427 | WP_000041675.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| ORI88_RS10100 (2084557) | 2084557..2084862 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| ORI88_RS10105 (2084970) | 2084970..2085680 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| ORI88_RS10110 (2085683) | 2085683..2086243 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| ORI88_RS10115 (2086278) | 2086278..2086619 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| ORI88_RS10120 (2086754) | 2086754..2087080 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| ORI88_RS10125 (2087286) | 2087286..2088500 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| ORI88_RS10130 (2088512) | 2088512..2089531 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| ORI88_RS10135 (2089719) | 2089719..2090876 | - | 1158 | Protein_1978 | Putative defective protein IntQ ; Integrase | Integrase |
| ORI88_RS10140 (2090890) | 2090890..2091585 | - | 696 | Protein_1979 | IS3 family transposase IS2 | Transposase |
| ORI88_RS10145 (2091582) | 2091582..2092349 | - | 768 | Protein_1980 | exonuclease | - |
| ORI88_RS10150 (2092442) | 2092442..2092633 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| ORI88_RS10155 (2092630) | 2092630..2092818 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| ORI88_RS10160 (2093386) | 2093386..2093604 | - | 219 | WP_001171942.1 | protein YdfC | - |
| ORI88_RS10165 (2093634) | 2093634..2093762 | - | 129 | WP_000344964.1 | protein YdfB | - |
| ORI88_RS10170 (2093764) | 2093764..2093919 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| ORI88_RS10175 (2094086) | 2094086..2094493 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| ORI88_RS10180 (2094577) | 2094577..2094807 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| ORI88_RS10185 (2094791) | 2094791..2095069 | + | 279 | Protein_1988 | hypothetical protein | - |
| ORI88_RS10190 (2095104) | 2095104..2095253 | + | 150 | WP_011443592.1 | protein YdfW | - |
| ORI88_RS10195 (2095690) | 2095690..2096022 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| ORI88_RS10200 (2096225) | 2096225..2096530 | - | 306 | WP_001326990.1 | protein YdfV | - |
| ORI88_RS10205 (2096555) | 2096555..2096794 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| ORI88_RS10210 (2096794) | 2096794..2097081 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| ORI88_RS10215 (2097153) | 2097153..2097308 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| ORI88_RS10220 (2097525) | 2097525..2097776 | + | 252 | WP_000980994.1 | protein Rem | - |
| ORI88_RS10225 (2097843) | 2097843..2098121 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| ORI88_RS10230 (2098123) | 2098123..2099172 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| ORI88_RS10235 (2099186) | 2099186..2099938 | + | 753 | WP_001047135.1 | antitermination protein | - |
| ORI88_RS10240 (2100216) | 2100216..2100305 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| ORI88_RS10245 (2100360) | 2100360..2100572 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| ORI88_RS10250 (2100873) | 2100873..2101088 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| ORI88_RS10255 (2101452) | 2101452..2101622 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| ORI88_RS10260 (2101842) | 2101842..2102057 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| ORI88_RS10265 (2102062) | 2102062..2102373 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| ORI88_RS10270 (2102370) | 2102370..2102903 | + | 534 | WP_001092971.1 | lysozyme | - |
| ORI88_RS10275 (2102900) | 2102900..2103397 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| ORI88_RS10280 (2103760) | 2103760..2103972 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| ORI88_RS10285 (2103983) | 2103983..2104171 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| ORI88_RS10290 (2104174) | 2104174..2104239 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| ORI88_RS10295 (2104318) | 2104318..2104473 | + | 156 | WP_001309517.1 | protein YnfN | - |
| ORI88_RS10300 (2104645) | 2104645..2104818 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| ORI88_RS10305 (2104970) | 2104970..2105380 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| ORI88_RS10310 (2105438) | 2105438..2105671 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| ORI88_RS10315 (2106060) | 2106060..2106629 | + | 570 | WP_000453612.1 | DNA-packaging protein | - |
| ORI88_RS10320 (2106580) | 2106580..2107542 | + | 963 | WP_001027733.1 | phage tail protein | - |
| ORI88_RS10325 (2107542) | 2107542..2108117 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| ORI88_RS10330 (2108215) | 2108215..2108805 | - | 591 | WP_000078178.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| ORI88_RS10335 (2109122) | 2109122..2109355 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| ORI88_RS10340 (2109424) | 2109424..2109537 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| ORI88_RS10345 (2110058) | 2110058..2111425 | + | 1368 | Protein_2020 | MHS family MFS transporter | - |
| ORI88_RS10350 (2111514) | 2111514..2112974 | + | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| ORI88_RS10355 (2113009) | 2113009..2113212 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| ORI88_RS10360 (2113389) | 2113389..2114075 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| ORI88_RS10365 (2114164) | 2114164..2114910 | - | 747 | WP_000636571.1 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG | VF |
| ORI88_RS10370 (2115047) | 2115047..2117092 | + | 2046 | WP_000210373.1 | peptidyl-dipeptidase Dcp | - |
| ORI88_RS10375 (2117136) | 2117136..2117654 | - | 519 | WP_001024746.1 | 2-oxo-tetronate isomerase | - |
| ORI88_RS10380 (2117930) | 2117930..2118322 | + | 393 | WP_000671737.1 | YdeI family stress tolerance OB fold protein | - |
| ORI88_RS10385 (2118577) | 2118577..2119467 | + | 891 | WP_000592814.1 | diguanylate cyclase DgcZ | - |
| ORI88_RS10390 (2119582) | 2119582..2119686 | - | 105 | WP_211180496.1 | protein MgtT | - |
| ORI88_RS10395 (2119686) | 2119686..2119781 | - | 96 | WP_000901367.1 | protein MgtS | - |
| ORI88_RS10400 (2119908) | 2119908..2121095 | - | 1188 | WP_001054204.1 | efflux MFS transporter YdeE | - |
| ORI88_RS10405 (2121290) | 2121290..2122189 | + | 900 | WP_000087187.1 | O-acetylserine/cysteine exporter | - |
| ORI88_RS10410 (2122220) | 2122220..2122438 | - | 219 | WP_000803657.1 | multiple antibiotic resistance protein MarB | - |
| ORI88_RS10415 (2122470) | 2122470..2122853 | - | 384 | WP_000091199.1 | MDR efflux pump AcrAB transcriptional activator MarA | - |
| ORI88_RS10420 (2122873) | 2122873..2123307 | - | 435 | WP_000843414.1 | multiple antibiotic resistance transcriptional regulator MarR | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0.004 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0.004 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0.005 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0.004 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0.004 | |
| Escherichia coli C | Prophage | TA75071 | NZ_CP020543 | 2249542..2301270 | 0.009 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0.004 |