MGE detailed information
MGE type: Genomic_island MGE length: 11673 bp
Accession: NZ_CP104618 Location: 606083..617755 Organism: Escherichia coli strain AHM9C68I Replicon: chromosome
Accession: NZ_CP104618 Location: 606083..617755 Organism: Escherichia coli strain AHM9C68I Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N5859_RS02910 (601084) | 601084..601518 | - | 435 | WP_000948824.1 | PTS galactosamine/N-acetylgalactosamine transporter subunit IIA | - |
| N5859_RS02915 (601536) | 601536..602414 | - | 879 | WP_001300474.1 | PTS N-acetylgalactosamine transporter subunit IID | - |
| N5859_RS02920 (602404) | 602404..603183 | - | 780 | WP_000406214.1 | PTS N-acetylgalactosamine transporter subunit IIC | - |
| N5859_RS02925 (603194) | 603194..603667 | - | 474 | WP_001295547.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| N5859_RS02930 (603690) | 603690..604970 | - | 1281 | WP_000681903.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| N5859_RS02935 (605219) | 605219..606028 | + | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| N5859_RS02940 (606083) | 606083..606547 | - | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| N5859_RS02945 (606547) | 606547..606882 | - | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| N5859_RS02950 (607031) | 607031..608602 | - | 1572 | WP_001723936.1 | galactarate dehydratase | - |
| N5859_RS02955 (608977) | 608977..610311 | + | 1335 | WP_001723935.1 | galactarate/glucarate/glycerate transporter GarP | - |
| N5859_RS02960 (610327) | 610327..611097 | + | 771 | WP_001723934.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| N5859_RS02965 (611127) | 611127..612017 | + | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| N5859_RS02970 (612114) | 612114..613259 | + | 1146 | WP_001424370.1 | glycerate 2-kinase | - |
| N5859_RS02980 (614282) | 614282..615469 | - | 1188 | WP_049253626.1 | YhaC family protein | - |
| N5859_RS02985 (615491) | 615491..616029 | - | 539 | Protein_583 | protein YhaB | - |
| N5859_RS02990 (616285) | 616285..616503 | - | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| N5859_RS02995 (616817) | 616817..617755 | + | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| N5859_RS03000 (617854) | 617854..618843 | + | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| N5859_RS03005 (618865) | 618865..620196 | + | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| N5859_RS03010 (620222) | 620222..621430 | + | 1209 | WP_001295545.1 | propionate kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.008 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.008 |