MGE detailed information
MGE type: Prophage MGE length: 40359 bp
Accession: NZ_CP097884 Location: 2828985..2869343 Organism: Escherichia coli str. K-12 substr. MG1655 strain K-12 Replicon: chromosome
Accession: NZ_CP097884 Location: 2828985..2869343 Organism: Escherichia coli str. K-12 substr. MG1655 strain K-12 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NAG72_RS13525 (2824884) | 2824884..2826104 | + | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
| NAG72_RS13530 (2826229) | 2826229..2826924 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| NAG72_RS13535 (2826877) | 2826877..2828169 | - | 1293 | WP_071592181.1 | voltage-gated ClC-type chloride channel ClcB | - |
| NAG72_RS13540 (2828328) | 2828328..2828942 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| NAG72_RS13545 (2828985) | 2828985..2829839 | - | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| NAG72_RS13550 (2829841) | 2829841..2830458 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| NAG72_RS13555 (2830469) | 2830469..2832892 | - | 2424 | WP_001340362.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| NAG72_RS13560 (2832953) | 2832953..2835379 | - | 2427 | WP_000041675.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| NAG72_RS13565 (2835578) | 2835578..2835883 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| NAG72_RS13570 (2835991) | 2835991..2836701 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| NAG72_RS13575 (2836704) | 2836704..2837264 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| NAG72_RS13580 (2837299) | 2837299..2837640 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| NAG72_RS13585 (2837775) | 2837775..2838101 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| NAG72_RS13590 (2838307) | 2838307..2839521 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| NAG72_RS13595 (2839533) | 2839533..2840552 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| NAG72_RS13600 (2840740) | 2840740..2841897 | - | 1158 | Protein_2636 | Putative defective protein IntQ ; Integrase | Integrase |
| NAG72_RS13605 (2841911) | 2841911..2842606 | - | 696 | Protein_2637 | IS3 family transposase IS2 | Transposase |
| NAG72_RS13610 (2842603) | 2842603..2843370 | - | 768 | Protein_2638 | exonuclease | - |
| NAG72_RS13615 (2843463) | 2843463..2843654 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| NAG72_RS13620 (2843651) | 2843651..2843839 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| NAG72_RS13625 (2844407) | 2844407..2844625 | - | 219 | WP_001171942.1 | protein YdfC | - |
| NAG72_RS13630 (2844655) | 2844655..2844783 | - | 129 | WP_000344964.1 | protein YdfB | - |
| NAG72_RS13635 (2844785) | 2844785..2844940 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| NAG72_RS13640 (2845107) | 2845107..2845514 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| NAG72_RS13645 (2845598) | 2845598..2845828 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| NAG72_RS13650 (2845812) | 2845812..2846090 | + | 279 | Protein_2646 | hypothetical protein | - |
| NAG72_RS13655 (2846125) | 2846125..2846274 | + | 150 | WP_011443592.1 | protein YdfW | - |
| NAG72_RS13660 (2846711) | 2846711..2847043 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| NAG72_RS13665 (2847246) | 2847246..2847551 | - | 306 | WP_001326990.1 | protein YdfV | - |
| NAG72_RS13670 (2847576) | 2847576..2847815 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| NAG72_RS13675 (2847815) | 2847815..2848102 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| NAG72_RS13680 (2848174) | 2848174..2848329 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| NAG72_RS13685 (2848546) | 2848546..2848797 | + | 252 | WP_000980994.1 | protein Rem | - |
| NAG72_RS13690 (2848864) | 2848864..2849142 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| NAG72_RS13695 (2849144) | 2849144..2850193 | + | 1050 | WP_001393597.1 | DUF968 domain-containing protein | - |
| NAG72_RS13700 (2850207) | 2850207..2850959 | + | 753 | WP_001047135.1 | antitermination protein | - |
| NAG72_RS13705 (2851237) | 2851237..2851326 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| NAG72_RS13710 (2851381) | 2851381..2851593 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| NAG72_RS13715 (2851894) | 2851894..2852109 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| NAG72_RS13720 (2852473) | 2852473..2852643 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| NAG72_RS13725 (2852863) | 2852863..2853078 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| NAG72_RS13730 (2853083) | 2853083..2853394 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| NAG72_RS13735 (2853391) | 2853391..2853924 | + | 534 | WP_001092971.1 | lysozyme | - |
| NAG72_RS13740 (2853921) | 2853921..2854418 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| NAG72_RS13745 (2854781) | 2854781..2854993 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| NAG72_RS13750 (2855004) | 2855004..2855192 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| NAG72_RS13755 (2855195) | 2855195..2855260 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| NAG72_RS13760 (2855339) | 2855339..2855494 | + | 156 | WP_001309517.1 | protein YnfN | - |
| NAG72_RS13765 (2855666) | 2855666..2855839 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| NAG72_RS13770 (2855991) | 2855991..2856401 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| NAG72_RS13775 (2856459) | 2856459..2856692 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| NAG72_RS13780 (2857081) | 2857081..2857650 | + | 570 | WP_000453612.1 | DNA-packaging protein | - |
| NAG72_RS13785 (2857601) | 2857601..2858563 | + | 963 | WP_001027733.1 | phage tail protein | - |
| NAG72_RS13790 (2858563) | 2858563..2859138 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| NAG72_RS13795 (2859236) | 2859236..2859826 | - | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| NAG72_RS13800 (2860143) | 2860143..2860376 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| NAG72_RS13805 (2860445) | 2860445..2860558 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| NAG72_RS13810 (2861079) | 2861079..2862446 | + | 1368 | Protein_2678 | MHS family MFS transporter | - |
| NAG72_RS13815 (2862535) | 2862535..2863995 | + | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| NAG72_RS13820 (2864030) | 2864030..2864233 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| NAG72_RS13825 (2864410) | 2864410..2865096 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| NAG72_RS13830 (2865185) | 2865185..2865931 | - | 747 | WP_000636571.1 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG | VF |
| NAG72_RS13835 (2866068) | 2866068..2868113 | + | 2046 | WP_000210373.1 | peptidyl-dipeptidase Dcp | - |
| NAG72_RS13840 (2868157) | 2868157..2868675 | - | 519 | WP_001024746.1 | 2-oxo-tetronate isomerase | - |
| NAG72_RS13845 (2868951) | 2868951..2869343 | + | 393 | WP_000671737.1 | YdeI family stress tolerance OB fold protein | - |
| NAG72_RS13850 (2869598) | 2869598..2870488 | + | 891 | WP_000592814.1 | diguanylate cyclase DgcZ | - |
| NAG72_RS13855 (2870603) | 2870603..2870707 | - | 105 | WP_211180496.1 | protein MgtT | - |
| NAG72_RS13860 (2870707) | 2870707..2870802 | - | 96 | WP_000901367.1 | protein MgtS | - |
| NAG72_RS13865 (2870929) | 2870929..2872116 | - | 1188 | WP_001054204.1 | efflux MFS transporter YdeE | - |
| NAG72_RS13870 (2872311) | 2872311..2873210 | + | 900 | WP_000087187.1 | O-acetylserine/cysteine exporter | - |
| NAG72_RS13875 (2873241) | 2873241..2873459 | - | 219 | WP_000803657.1 | multiple antibiotic resistance protein MarB | - |
| NAG72_RS13880 (2873491) | 2873491..2873874 | - | 384 | WP_000091199.1 | MDR efflux pump AcrAB transcriptional activator MarA | - |
| NAG72_RS13885 (2873894) | 2873894..2874328 | - | 435 | WP_192535033.1 | multiple antibiotic resistance transcriptional regulator MarR | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0.004 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0.004 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0.005 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0.004 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0.004 | |
| Escherichia coli C | Prophage | TA75071 | NZ_CP020543 | 2249542..2301270 | 0.009 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0.004 |