MGE detailed information
MGE type: Genomic_island MGE length: 9947 bp
Accession: NZ_CP091652 Location: 1971294..1981240 Organism: Escherichia coli strain KMi025 Replicon: chromosome
Accession: NZ_CP091652 Location: 1971294..1981240 Organism: Escherichia coli strain KMi025 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L6L63_RS09620 (1967127) | 1967127..1968458 | - | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| L6L63_RS09625 (1968480) | 1968480..1969469 | - | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| L6L63_RS09630 (1969568) | 1969568..1970506 | - | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| L6L63_RS09635 (1970820) | 1970820..1971038 | + | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| L6L63_RS09640 (1971294) | 1971294..1971832 | + | 539 | Protein_1890 | protein YhaB | - |
| L6L63_RS09645 (1971854) | 1971854..1973041 | + | 1188 | WP_049253626.1 | YhaC family protein | - |
| L6L63_RS09655 (1974064) | 1974064..1975209 | - | 1146 | WP_001424370.1 | glycerate 2-kinase | - |
| L6L63_RS09660 (1975306) | 1975306..1976196 | - | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| L6L63_RS09665 (1976226) | 1976226..1976996 | - | 771 | WP_001723934.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| L6L63_RS09670 (1977012) | 1977012..1978346 | - | 1335 | WP_001723935.1 | galactarate/glucarate/glycerate transporter GarP | - |
| L6L63_RS09675 (1978721) | 1978721..1980292 | + | 1572 | WP_001723936.1 | galactarate dehydratase | - |
| L6L63_RS09680 (1980441) | 1980441..1980776 | + | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| L6L63_RS09685 (1980776) | 1980776..1981240 | + | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| L6L63_RS09690 (1981295) | 1981295..1982104 | - | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| L6L63_RS09695 (1982353) | 1982353..1983633 | + | 1281 | WP_000681903.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| L6L63_RS09700 (1983656) | 1983656..1984129 | + | 474 | WP_001295547.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| L6L63_RS09705 (1984140) | 1984140..1984919 | + | 780 | WP_000406214.1 | PTS N-acetylgalactosamine transporter subunit IIC | - |
| L6L63_RS09710 (1984909) | 1984909..1985787 | + | 879 | WP_001300474.1 | PTS N-acetylgalactosamine transporter subunit IID | - |
| L6L63_RS09715 (1985805) | 1985805..1986239 | + | 435 | WP_000948824.1 | PTS galactosamine/N-acetylgalactosamine transporter subunit IIA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1047 | NC_000913 | 3267854..3277801 | 0.009 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22703 | NC_010473 | 3363621..3373568 | 0.009 | |
| Escherichia coli BW2952 | Genomic island | TA23871 | NC_012759 | 3153024..3162971 | 0.009 | |
| Escherichia coli DH1 | Genomic island | TA27421 | NC_017638 | 3245760..3255707 | 0.01 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29016 | NC_020518 | 2741187..2751134 | 0.009 | |
| Escherichia coli BW25113 | Genomic island | TA48700 | NZ_CP009273 | 3261213..3271160 | 0.009 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90495 | NZ_CP025520 | 2121277..2131224 | 0.01 |