MGE detailed information
MGE type: Prophage MGE length: 26869 bp
Accession: NZ_CP087136 Location: 1625806..1652674 Organism: Escherichia coli strain JW5503 Replicon: chromosome
Accession: NZ_CP087136 Location: 1625806..1652674 Organism: Escherichia coli strain JW5503 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOX89_RS07965 (1622321) | 1622321..1623067 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| LOX89_RS07970 (1623156) | 1623156..1623842 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| LOX89_RS07975 (1624019) | 1624019..1624222 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| LOX89_RS07980 (1624257) | 1624257..1625717 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| LOX89_RS07985 (1625806) | 1625806..1627173 | - | 1368 | Protein_1565 | MHS family MFS transporter | - |
| LOX89_RS07990 (1627694) | 1627694..1627807 | + | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| LOX89_RS07995 (1627876) | 1627876..1628109 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| LOX89_RS08000 (1628426) | 1628426..1629016 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| LOX89_RS08005 (1629114) | 1629114..1629689 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| LOX89_RS08010 (1629689) | 1629689..1630651 | - | 963 | WP_001027733.1 | phage tail protein | - |
| LOX89_RS08015 (1630602) | 1630602..1631171 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| LOX89_RS08020 (1631560) | 1631560..1631793 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| LOX89_RS08025 (1631851) | 1631851..1632261 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| LOX89_RS08030 (1632413) | 1632413..1632586 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| LOX89_RS08035 (1632758) | 1632758..1632913 | - | 156 | WP_001309517.1 | protein YnfN | - |
| LOX89_RS08040 (1632992) | 1632992..1633057 | - | 66 | WP_120795388.1 | small protein YnfR | - |
| LOX89_RS08045 (1633060) | 1633060..1633248 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| LOX89_RS08050 (1633259) | 1633259..1633471 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| LOX89_RS08055 (1633834) | 1633834..1634331 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| LOX89_RS08060 (1634328) | 1634328..1634861 | - | 534 | WP_001092971.1 | lysozyme | - |
| LOX89_RS08065 (1634858) | 1634858..1635169 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| LOX89_RS08070 (1635174) | 1635174..1635389 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| LOX89_RS08075 (1635609) | 1635609..1635779 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| LOX89_RS08080 (1636143) | 1636143..1636358 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| LOX89_RS08085 (1636659) | 1636659..1636871 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| LOX89_RS08090 (1636926) | 1636926..1637015 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| LOX89_RS08095 (1637293) | 1637293..1638045 | - | 753 | WP_001047135.1 | antitermination protein | - |
| LOX89_RS08100 (1638059) | 1638059..1639108 | - | 1050 | WP_001393597.1 | DUF968 domain-containing protein | - |
| LOX89_RS08105 (1639110) | 1639110..1639388 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| LOX89_RS08110 (1639455) | 1639455..1639706 | - | 252 | WP_000980994.1 | protein Rem | - |
| LOX89_RS08115 (1639923) | 1639923..1640078 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| LOX89_RS08120 (1640150) | 1640150..1640437 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| LOX89_RS08125 (1640437) | 1640437..1640676 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| LOX89_RS08130 (1640701) | 1640701..1641006 | + | 306 | WP_001326990.1 | protein YdfV | - |
| LOX89_RS08135 (1641209) | 1641209..1641541 | + | 333 | WP_001301033.1 | FlxA-like family protein | - |
| LOX89_RS08140 (1641978) | 1641978..1642127 | - | 150 | WP_011443592.1 | protein YdfW | - |
| LOX89_RS08145 (1642162) | 1642162..1642440 | - | 279 | Protein_1597 | protein YdfX | - |
| LOX89_RS08150 (1642424) | 1642424..1642654 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| LOX89_RS08155 (1642738) | 1642738..1643145 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| LOX89_RS08160 (1643312) | 1643312..1643467 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| LOX89_RS22565 (1643469) | 1643469..1643597 | + | 129 | WP_000344964.1 | protein YdfB | - |
| LOX89_RS08165 (1643627) | 1643627..1643845 | + | 219 | WP_001171942.1 | protein YdfC | - |
| LOX89_RS08170 (1644413) | 1644413..1644601 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| LOX89_RS08175 (1644598) | 1644598..1644789 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| LOX89_RS08180 (1644882) | 1644882..1645649 | + | 768 | Protein_1605 | exonuclease | - |
| LOX89_RS08185 (1645646) | 1645646..1646341 | + | 696 | Protein_1606 | IS3 family transposase IS2 | Transposase |
| LOX89_RS08190 (1646355) | 1646355..1647512 | + | 1158 | Protein_1607 | Tyrosine recombinase XerD ; Integrase | Integrase |
| LOX89_RS08195 (1647700) | 1647700..1648719 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| LOX89_RS08200 (1648731) | 1648731..1649945 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| LOX89_RS08205 (1650151) | 1650151..1650477 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| LOX89_RS08210 (1650612) | 1650612..1650953 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| LOX89_RS08215 (1650988) | 1650988..1651548 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| LOX89_RS08220 (1651551) | 1651551..1652261 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| LOX89_RS08225 (1652369) | 1652369..1652674 | + | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| LOX89_RS08230 (1652873) | 1652873..1655299 | + | 2427 | WP_000041675.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.007 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0.006 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0.006 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0.005 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0.007 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0.006 | |
| Escherichia coli DH1 | Prophage | TA27404 | NC_017638 | 1615804..1634890 | 0.009 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0.006 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.004 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0.006 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0.006 |