MGE detailed information
MGE type: Prophage MGE length: 27292 bp
Accession: NZ_CP084209 Location: 2222730..2250021 Organism: Escherichia coli strain EC2648-R2 Replicon: chromosome
Accession: NZ_CP084209 Location: 2222730..2250021 Organism: Escherichia coli strain EC2648-R2 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDB16_RS10680 (2218979) | 2218979..2221405 | - | 2427 | WP_000041675.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| LDB16_RS10685 (2221604) | 2221604..2221909 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| LDB16_RS10690 (2222017) | 2222017..2222727 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| LDB16_RS10695 (2222730) | 2222730..2223290 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| LDB16_RS10700 (2223325) | 2223325..2223666 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| LDB16_RS10705 (2223801) | 2223801..2224127 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| LDB16_RS10710 (2224333) | 2224333..2225547 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| LDB16_RS10715 (2225559) | 2225559..2226578 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| LDB16_RS10720 (2226766) | 2226766..2227923 | - | 1158 | Protein_2104 | Chemotaxis response regulator protein-glutamate methylesterase ; Integrase | Integrase |
| LDB16_RS10725 (2227937) | 2227937..2228632 | - | 696 | Protein_2105 | IS3 family transposase IS2 | Transposase |
| LDB16_RS10730 (2228629) | 2228629..2229396 | - | 768 | Protein_2106 | exonuclease | - |
| LDB16_RS10735 (2229489) | 2229489..2229680 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| LDB16_RS10740 (2229677) | 2229677..2229865 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| LDB16_RS10745 (2230433) | 2230433..2230651 | - | 219 | WP_001171942.1 | protein YdfC | - |
| LDB16_RS23315 (2230681) | 2230681..2230809 | - | 129 | WP_000344964.1 | protein YdfB | - |
| LDB16_RS10750 (2230811) | 2230811..2230966 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| LDB16_RS10755 (2231133) | 2231133..2231540 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| LDB16_RS10760 (2231624) | 2231624..2231854 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| LDB16_RS10765 (2231838) | 2231838..2232116 | + | 279 | Protein_2114 | protein YdfX | - |
| LDB16_RS10770 (2232151) | 2232151..2232300 | + | 150 | WP_011443592.1 | protein YdfW | - |
| LDB16_RS10775 (2232737) | 2232737..2233069 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| LDB16_RS10780 (2233272) | 2233272..2233577 | - | 306 | WP_001326990.1 | protein YdfV | - |
| LDB16_RS10785 (2233602) | 2233602..2233841 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| LDB16_RS10790 (2233841) | 2233841..2234128 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| LDB16_RS10795 (2234200) | 2234200..2234355 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| LDB16_RS10800 (2234572) | 2234572..2234823 | + | 252 | WP_000980994.1 | protein Rem | - |
| LDB16_RS10805 (2234890) | 2234890..2235168 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| LDB16_RS10810 (2235170) | 2235170..2236219 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| LDB16_RS10815 (2236233) | 2236233..2236985 | + | 753 | WP_001047135.1 | antitermination protein | - |
| LDB16_RS10820 (2237263) | 2237263..2237352 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| LDB16_RS10825 (2237407) | 2237407..2237619 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| LDB16_RS10830 (2237920) | 2237920..2238135 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| LDB16_RS10835 (2238499) | 2238499..2238669 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| LDB16_RS10840 (2238889) | 2238889..2239104 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| LDB16_RS10845 (2239109) | 2239109..2239420 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| LDB16_RS10850 (2239417) | 2239417..2239950 | + | 534 | WP_001092971.1 | lysozyme | - |
| LDB16_RS10855 (2239947) | 2239947..2240444 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| LDB16_RS10860 (2240807) | 2240807..2241019 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| LDB16_RS10865 (2241030) | 2241030..2241218 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| LDB16_RS10870 (2241221) | 2241221..2241286 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| LDB16_RS10875 (2241365) | 2241365..2241520 | + | 156 | WP_001309517.1 | protein YnfN | - |
| LDB16_RS10880 (2241692) | 2241692..2241865 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| LDB16_RS10885 (2242017) | 2242017..2242427 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| LDB16_RS10890 (2242485) | 2242485..2242718 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| LDB16_RS10895 (2243107) | 2243107..2243676 | + | 570 | WP_000453612.1 | DNA-packaging protein | - |
| LDB16_RS10900 (2243627) | 2243627..2244589 | + | 963 | WP_001027733.1 | phage tail protein | - |
| LDB16_RS10905 (2244589) | 2244589..2245164 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| LDB16_RS10910 (2245262) | 2245262..2245852 | - | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| LDB16_RS10915 (2246169) | 2246169..2246402 | - | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| LDB16_RS10920 (2246471) | 2246471..2246584 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| LDB16_RS10925 (2247105) | 2247105..2248472 | + | 1368 | Protein_2146 | MHS family MFS transporter | - |
| LDB16_RS10930 (2248561) | 2248561..2250021 | + | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| LDB16_RS10935 (2250056) | 2250056..2250259 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| LDB16_RS10940 (2250436) | 2250436..2251122 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| LDB16_RS10945 (2251211) | 2251211..2251957 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| LDB16_RS10950 (2252094) | 2252094..2254139 | + | 2046 | WP_000210373.1 | peptidyl-dipeptidase Dcp | - |
| LDB16_RS10955 (2254183) | 2254183..2254701 | - | 519 | WP_001024746.1 | 2-oxo-tetronate isomerase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0.009 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0.009 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0.006 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0.009 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0.009 | |
| Escherichia coli DH1 | Prophage | TA27404 | NC_017638 | 1615804..1634890 | 0.009 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0.009 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.005 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0.006 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0.009 |