MGE detailed information
MGE type: Prophage MGE length: 27530 bp
Accession: NZ_CP084207 Location: 3031857..3059386 Organism: Escherichia coli strain EC2648-R1-1 Replicon: chromosome
Accession: NZ_CP084207 Location: 3031857..3059386 Organism: Escherichia coli strain EC2648-R1-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDB15_RS14500 (3028106) | 3028106..3030532 | - | 2427 | WP_000041675.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| LDB15_RS14505 (3030731) | 3030731..3031036 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| LDB15_RS14510 (3031144) | 3031144..3031854 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| LDB15_RS14515 (3031857) | 3031857..3032417 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| LDB15_RS14520 (3032452) | 3032452..3032793 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| LDB15_RS14525 (3032928) | 3032928..3033254 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| LDB15_RS14530 (3033460) | 3033460..3034674 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| LDB15_RS14535 (3034686) | 3034686..3035705 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| LDB15_RS14540 (3035893) | 3035893..3037050 | - | 1158 | Protein_2837 | Putative defective protein IntQ ; Integrase | Integrase |
| LDB15_RS14545 (3037064) | 3037064..3037759 | - | 696 | Protein_2838 | IS3 family transposase IS2 | Transposase |
| LDB15_RS14550 (3037756) | 3037756..3038523 | - | 768 | Protein_2839 | exonuclease | - |
| LDB15_RS14555 (3038616) | 3038616..3038807 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| LDB15_RS14560 (3038804) | 3038804..3038992 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| LDB15_RS14565 (3039560) | 3039560..3039778 | - | 219 | WP_001171942.1 | protein YdfC | - |
| LDB15_RS23330 (3039808) | 3039808..3039936 | - | 129 | WP_000344964.1 | protein YdfB | - |
| LDB15_RS14570 (3039938) | 3039938..3040093 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| LDB15_RS14575 (3040260) | 3040260..3040667 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| LDB15_RS14580 (3040751) | 3040751..3040981 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| LDB15_RS14585 (3040965) | 3040965..3041243 | + | 279 | Protein_2847 | protein YdfX | - |
| LDB15_RS14590 (3041278) | 3041278..3041427 | + | 150 | WP_011443592.1 | protein YdfW | - |
| LDB15_RS14595 (3041864) | 3041864..3042196 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| LDB15_RS14600 (3042399) | 3042399..3042704 | - | 306 | WP_001326990.1 | protein YdfV | - |
| LDB15_RS14605 (3042729) | 3042729..3042968 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| LDB15_RS14610 (3042968) | 3042968..3043255 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| LDB15_RS14615 (3043327) | 3043327..3043482 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| LDB15_RS14620 (3043699) | 3043699..3043950 | + | 252 | WP_000980994.1 | protein Rem | - |
| LDB15_RS14625 (3044017) | 3044017..3044295 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| LDB15_RS14630 (3044297) | 3044297..3045346 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| LDB15_RS14635 (3045360) | 3045360..3046112 | + | 753 | WP_001047135.1 | antitermination protein | - |
| LDB15_RS14640 (3046390) | 3046390..3046479 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| LDB15_RS14645 (3046534) | 3046534..3046746 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| LDB15_RS14650 (3047047) | 3047047..3047262 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| LDB15_RS14655 (3047626) | 3047626..3047796 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| LDB15_RS14660 (3048016) | 3048016..3048231 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| LDB15_RS14665 (3048236) | 3048236..3048547 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| LDB15_RS14670 (3048544) | 3048544..3049077 | + | 534 | WP_001092971.1 | lysozyme | - |
| LDB15_RS14675 (3049074) | 3049074..3049571 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| LDB15_RS14680 (3049934) | 3049934..3050146 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| LDB15_RS14685 (3050157) | 3050157..3050345 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| LDB15_RS14690 (3050348) | 3050348..3050413 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| LDB15_RS14695 (3050492) | 3050492..3050647 | + | 156 | WP_001309517.1 | protein YnfN | - |
| LDB15_RS14700 (3050819) | 3050819..3050992 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| LDB15_RS14705 (3051144) | 3051144..3051554 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| LDB15_RS14710 (3051612) | 3051612..3051845 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| LDB15_RS14715 (3052234) | 3052234..3052803 | + | 570 | WP_000453612.1 | DNA-packaging protein | - |
| LDB15_RS14720 (3052754) | 3052754..3053716 | + | 963 | WP_001027733.1 | phage tail protein | - |
| LDB15_RS14725 (3053716) | 3053716..3054291 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| LDB15_RS14730 (3054389) | 3054389..3054979 | - | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| LDB15_RS14735 (3055296) | 3055296..3055529 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| LDB15_RS14740 (3055598) | 3055598..3055711 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| LDB15_RS14745 (3056232) | 3056232..3057599 | + | 1368 | Protein_2879 | MHS family MFS transporter | - |
| LDB15_RS14750 (3057688) | 3057688..3059148 | + | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| LDB15_RS14755 (3059183) | 3059183..3059386 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| LDB15_RS14760 (3059563) | 3059563..3060249 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| LDB15_RS14765 (3060338) | 3060338..3061084 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| LDB15_RS14770 (3061221) | 3061221..3063266 | + | 2046 | WP_000210373.1 | peptidyl-dipeptidase Dcp | - |
| LDB15_RS14775 (3063310) | 3063310..3063828 | - | 519 | WP_001024746.1 | 2-oxo-tetronate isomerase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20067 | HG738867 | 1519531..1552992 | 0.009 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA1041 | NC_000913 | 1631002..1664463 | 0.009 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0.006 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22686 | NC_010473 | 1718651..1753448 | 0.009 | |
| Escherichia coli BW2952 | Prophage | TA23854 | NC_012759 | 1521085..1554546 | 0.009 | |
| Escherichia coli DH1 | Prophage | TA27404 | NC_017638 | 1615804..1634890 | 0.009 | |
| Escherichia coli BW25113 | Prophage | TA48683 | NZ_CP009273 | 1625259..1658720 | 0.009 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.005 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0.006 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285017 | NZ_HG738867 | 1519531..1552992 | 0.009 |