MGE detailed information
MGE type: Conjugative plasmid MGE length: 148555 bp
Accession: NZ_CP084097 Location: 1..148555 Organism: Escherichia coli O78 strain 3 Replicon: plasmid unnamed
Accession: NZ_CP084097 Location: 1..148555 Organism: Escherichia coli O78 strain 3 Replicon: plasmid unnamed
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCF29_RS24940 (2037) | 2037..2258 | - | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| LCF29_RS24945 (2393) | 2393..2908 | - | 516 | WP_000809841.1 | type IV conjugative transfer system lipoprotein TraV | - |
| LCF29_RS24950 (2905) | 2905..3156 | - | 252 | WP_001038342.1 | conjugal transfer protein TrbG | - |
| LCF29_RS24955 (3168) | 3168..3365 | - | 198 | WP_001324648.1 | conjugal transfer protein TrbD | - |
| LCF29_RS24960 (3352) | 3352..3942 | - | 591 | WP_000002792.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| LCF29_RS24965 (3932) | 3932..5359 | - | 1428 | WP_000146692.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| LCF29_RS24970 (5359) | 5359..6087 | - | 729 | WP_001230787.1 | type-F conjugative transfer system secretin TraK | - |
| LCF29_RS24975 (6074) | 6074..6640 | - | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| LCF29_RS24980 (6662) | 6662..6973 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| LCF29_RS24985 (6988) | 6988..7353 | - | 366 | WP_000994779.1 | type IV conjugative transfer system pilin TraA | - |
| LCF29_RS24990 (7386) | 7386..7787 | - | 402 | WP_001369361.1 | conjugal transfer relaxosome DNA-bindin protein TraY | - |
| LCF29_RS24995 (7880) | 7880..8569 | - | 690 | WP_000283385.1 | conjugal transfer transcriptional regulator TraJ | - |
| LCF29_RS25000 (8756) | 8756..9139 | - | 384 | WP_001151524.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| LCF29_RS25005 (9460) | 9460..10062 | + | 603 | WP_000243709.1 | hypothetical protein | VF |
| LCF29_RS25010 (10359) | 10359..11180 | - | 822 | WP_001234469.1 | DUF932 domain-containing protein | - |
| LCF29_RS25015 (11301) | 11301..11588 | - | 288 | WP_000107535.1 | hypothetical protein | - |
| LCF29_RS25020 (11613) | 11613..11819 | - | 207 | WP_000547939.1 | hypothetical protein | - |
| LCF29_RS25025 (11889) | 11889..12062 | + | 174 | Protein_18 | hypothetical protein | - |
| LCF29_RS25030 (12060) | 12060..12290 | - | 231 | WP_001426396.1 | hypothetical protein | - |
| LCF29_RS25035 (12510) | 12510..12635 | - | 126 | WP_001372321.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| LCF29_RS25040 (12577) | 12577..12726 | - | 150 | Protein_21 | plasmid maintenance protein Mok | - |
| - (12712) | 12712..12936 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (12712) | 12712..12936 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (12712) | 12712..12936 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (12712) | 12712..12936 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| LCF29_RS25045 (12748) | 12748..12936 | + | 189 | WP_001299721.1 | hypothetical protein | - |
| LCF29_RS25050 (12905) | 12905..13667 | - | 763 | Protein_23 | plasmid SOS inhibition protein A | - |
| LCF29_RS25055 (13664) | 13664..14098 | - | 435 | WP_000845895.1 | conjugation system SOS inhibitor PsiB | - |
| LCF29_RS25060 (14153) | 14153..16111 | - | 1959 | WP_001145469.1 | ParB/RepB/Spo0J family partition protein | - |
| LCF29_RS25065 (16170) | 16170..16403 | - | 234 | WP_000006004.1 | DUF905 domain-containing protein | - |
| LCF29_RS25070 (16459) | 16459..16944 | - | 486 | WP_042029316.1 | single-stranded DNA-binding protein | - |
| LCF29_RS25075 (17094) | 17094..18995 | - | 1902 | WP_000936285.1 | group II intron reverse transcriptase/maturase | - |
| LCF29_RS25080 (20120) | 20120..20368 | - | 249 | WP_002433376.1 | hypothetical protein | - |
| LCF29_RS25085 (20520) | 20520..21083 | - | 564 | WP_001332335.1 | class I SAM-dependent methyltransferase | - |
| LCF29_RS25090 (21131) | 21131..22492 | - | 1362 | WP_000170649.1 | DUF3560 domain-containing protein | - |
| LCF29_RS25095 (22544) | 22544..22774 | - | 231 | WP_000218642.1 | hypothetical protein | - |
| LCF29_RS25100 (23291) | 23291..23544 | + | 254 | Protein_33 | hypothetical protein | - |
| LCF29_RS25105 (23768) | 23768..23950 | - | 183 | WP_001027505.1 | hypothetical protein | - |
| LCF29_RS25110 (23950) | 23950..24411 | - | 462 | WP_042007484.1 | DUF1380 family protein | - |
| LCF29_RS25115 (24411) | 24411..24836 | - | 426 | WP_001198922.1 | antirestriction protein | - |
| LCF29_RS25120 (24979) | 24979..26091 | + | 1113 | WP_021513474.1 | IS4 family transposase IS421 | Transposase |
| LCF29_RS25125 (26284) | 26284..26453 | - | 170 | Protein_38 | hypothetical protein | - |
| LCF29_RS25130 (27090) | 27090..28061 | - | 972 | WP_000817028.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| LCF29_RS25135 (28061) | 28061..29227 | - | 1167 | WP_001238646.1 | Sporulation initiation inhibitor protein Soj | VF |
| LCF29_RS25145 (30321) | 30321..30488 | - | 168 | WP_000638861.1 | hypothetical protein | - |
| LCF29_RS25150 (30738) | 30738..32240 | - | 1503 | WP_225343803.1 | hypothetical protein | - |
| LCF29_RS25155 (32857) | 32857..33282 | - | 426 | WP_012300440.1 | hypothetical protein | - |
| LCF29_RS25160 (33424) | 33424..33903 | + | 480 | WP_000190054.1 | hypothetical protein | - |
| LCF29_RS25165 (34343) | 34343..35005 | + | 663 | WP_000163251.1 | hypothetical protein | - |
| LCF29_RS25175 (36238) | 36238..38439 | - | 2202 | WP_000973517.1 | Ferric aerobactin receptor | VF |
| LCF29_RS25180 (38465) | 38465..39798 | - | 1334 | Protein_49 | L-lysine N6-monooxygenase | VF |
| LCF29_RS25185 (39795) | 39795..41537 | - | 1743 | WP_001015721.1 | Aerobactin synthase | VF |
| LCF29_RS25190 (41537) | 41537..42484 | - | 948 | WP_000011907.1 | N(6)-hydroxylysine O-acetyltransferase | VF |
| LCF29_RS25195 (42485) | 42485..44209 | - | 1725 | WP_000602863.1 | N(2)-citryl-N(6)-acetyl-N(6)-hydroxylysine synthase | VF |
| LCF29_RS25200 (44345) | 44345..45538 | + | 1194 | WP_000095526.1 | MFS transporter | - |
| LCF29_RS25205 (45918) | 45918..46298 | - | 381 | WP_001318207.1 | fluoride efflux transporter CrcB | - |
| LCF29_RS25210 (46639) | 46639..47052 | - | 414 | Protein_55 | phosphopyruvate hydratase | - |
| LCF29_RS25215 (47050) | 47050..47307 | + | 258 | Protein_56 | transposase | - |
| LCF29_RS25220 (47541) | 47541..48398 | - | 858 | WP_000968139.1 | Manganese transport system membrane protein MntB | ARG |
| LCF29_RS25225 (48395) | 48395..49252 | - | 858 | WP_001101723.1 | Manganese transport system membrane protein MntB | ARG |
| LCF29_RS25230 (49249) | 49249..50076 | - | 828 | WP_000983712.1 | Iron(3+)-hydroxamate import ATP-binding protein FhuC | VF |
| LCF29_RS25235 (50076) | 50076..50990 | - | 915 | WP_000949004.1 | Putative metal ABC transporter substrate-binding protein Hpf | VF |
| LCF29_RS25240 (51346) | 51346..52043 | + | 698 | WP_223155668.1 | IS1 family transposase IS1A | Transposase |
| LCF29_RS25245 (52223) | 52223..52736 | - | 514 | Protein_62 | DUF4113 domain-containing protein | - |
| LCF29_RS25250 (52797) | 52797..52901 | - | 105 | Protein_63 | AAA family ATPase | - |
| LCF29_RS25255 (52903) | 52903..53226 | - | 324 | Protein_64 | IS21 family transposase IS21 | Transposase |
| LCF29_RS25260 (53972) | 53972..54949 | + | 978 | WP_000361611.1 | RepB family plasmid replication initiator protein | - |
| LCF29_RS25265 (55234) | 55234..55974 | - | 741 | WP_001066954.1 | tyrosine-type recombinase/integrase | - |
| LCF29_RS25270 (56095) | 56095..56283 | - | 189 | WP_001312821.1 | hypothetical protein | - |
| LCF29_RS25275 (56657) | 56657..57559 | - | 903 | WP_001312822.1 | hypothetical protein | VF |
| LCF29_RS25280 (57628) | 57628..58737 | - | 1110 | WP_000771475.1 | SDR family oxidoreductase | - |
| LCF29_RS25285 (59170) | 59170..60123 | - | 954 | WP_000280980.1 | Protease 7 | VF |
| LCF29_RS25290 (61420) | 61420..61599 | - | 180 | Protein_71 | transposase | - |
| LCF29_RS25295 (61738) | 61738..62951 | + | 1214 | WP_162842477.1 | IS3 family transposase IS629 | Transposase |
| LCF29_RS25300 (63099) | 63099..63424 | - | 326 | Protein_73 | IS3 family transposase ISLad1 | Transposase |
| LCF29_RS25305 (63470) | 63470..63810 | + | 341 | Protein_74 | IS3 family transposase | - |
| LCF29_RS25315 (65203) | 65203..65469 | + | 267 | Protein_76 | efflux transporter periplasmic adaptor subunit | - |
| LCF29_RS25320 (65466) | 65466..67406 | + | 1941 | WP_000733250.1 | Macrolide export ATP-binding/permease protein MacB | VF |
| LCF29_RS25325 (67410) | 67410..68780 | + | 1371 | WP_001312828.1 | efflux transporter outer membrane subunit | - |
| LCF29_RS25330 (69254) | 69254..69448 | + | 195 | Protein_79 | IS200-IS605 family transposase IS200C | Transposase |
| LCF29_RS25335 (69577) | 69577..70518 | - | 942 | WP_000974762.1 | hypothetical protein | - |
| LCF29_RS25340 (70753) | 70753..72142 | - | 1390 | Protein_81 | ISNCY family transposase ISKpn21 | Transposase |
| LCF29_RS25345 (72452) | 72452..72601 | - | 150 | Protein_82 | IS3 family transposase IS2 | Transposase |
| LCF29_RS25350 (72779) | 72779..73972 | - | 1194 | WP_000450495.1 | GTP-binding protein | - |
| LCF29_RS25360 (77051) | 77051..77344 | + | 294 | WP_000738422.1 | increased serum survival lipoprotein Iss | - |
| LCF29_RS25370 (77402) | 77402..77601 | - | 200 | Protein_86 | lysis protein | - |
| LCF29_RS25375 (78155) | 78155..79185 | + | 1031 | Protein_87 | integrase core domain-containing protein | - |
| LCF29_RS25380 (80496) | 80496..81611 | + | 1116 | WP_001318220.1 | Elloramycin glycosyltransferase ElmGT | VF |
| LCF29_RS25385 (81751) | 81751..85410 | + | 3660 | WP_001111199.1 | Multidrug efflux ATP-binding/permease protein | VF |
| LCF29_RS25390 (85514) | 85514..86743 | + | 1230 | WP_000933675.1 | Enterochelin esterase | VF |
| LCF29_RS25395 (86828) | 86828..87784 | + | 957 | WP_000271276.1 | Ferri-bacillibactin esterase BesA | VF |
| LCF29_RS25400 (87829) | 87829..90006 | - | 2178 | WP_001222186.1 | Ferric enterobactin receptor | VF |
| LCF29_RS25775 (90861) | 90861..90995 | - | 135 | WP_249531455.1 | hypothetical protein | - |
| LCF29_RS25405 (90955) | 90955..91896 | - | 942 | WP_001312841.1 | 3-deoxy-7-phosphoheptulonate synthase | - |
| LCF29_RS25410 (92077) | 92077..92377 | + | 301 | Protein_95 | hypothetical protein | - |
| LCF29_RS25415 (92455) | 92455..92802 | - | 348 | WP_000142437.1 | DUF6404 family protein | - |
| LCF29_RS25420 (93104) | 93104..93586 | - | 483 | WP_001311056.1 | hypothetical protein | - |
| LCF29_RS25425 (93703) | 93703..94551 | - | 849 | WP_001058005.1 | 3'-5' exonuclease | - |
| LCF29_RS25430 (94597) | 94597..94875 | - | 279 | WP_097309154.1 | type II toxin-antitoxin system toxin YacB | Toxin Detail |
| LCF29_RS25435 (94875) | 94875..95144 | - | 270 | WP_000079941.1 | type II toxin-antitoxin system antitoxin YacA | Antitoxin Detail |
| LCF29_RS25440 (95666) | 95666..96894 | + | 1229 | WP_112030635.1 | IS3 family transposase IS2 | Transposase |
| LCF29_RS25445 (97091) | 97091..98365 | + | 1275 | WP_000489607.1 | HlyD family secretion protein | - |
| LCF29_RS25780 (98472) | 98472..98744 | + | 273 | Protein_103 | IS4 family transposase IS421 | Transposase |
| LCF29_RS25455 (98925) | 98925..99911 | + | 987 | Protein_104 | IS4 family transposase IS421 | Transposase |
| LCF29_RS25460 (100535) | 100535..100738 | - | 204 | Protein_105 | hypothetical protein | - |
| LCF29_RS25465 (100911) | 100911..101078 | + | 168 | Protein_106 | colicin-B | - |
| LCF29_RS25470 (101096) | 101096..101623 | - | 528 | WP_000203272.1 | colicin B immunity protein | - |
| LCF29_RS25475 (101867) | 101867..102682 | + | 816 | WP_001312845.1 | lipid II-degrading bacteriocin colicin M | - |
| LCF29_RS25480 (102732) | 102732..103085 | - | 354 | WP_000864812.1 | colicin M immunity protein | - |
| LCF29_RS25485 (103263) | 103263..104054 | - | 792 | WP_000016494.1 | site-specific integrase | - |
| LCF29_RS25490 (104051) | 104051..104740 | - | 690 | WP_000796229.1 | hypothetical protein | - |
| LCF29_RS25495 (104784) | 104784..105134 | - | 351 | WP_000493379.1 | hypothetical protein | - |
| LCF29_RS25500 (105670) | 105670..105900 | + | 231 | WP_001261286.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| LCF29_RS25505 (105897) | 105897..106313 | + | 417 | WP_001034044.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| LCF29_RS25510 (106388) | 106388..107953 | + | 1566 | WP_001128474.1 | AAA family ATPase | - |
| LCF29_RS25515 (107938) | 107938..108960 | + | 1023 | WP_000361402.1 | helicase UvrD | - |
| LCF29_RS25525 (109794) | 109794..113927 | - | 4134 | WP_001080138.1 | Hemoglobin-binding protease hbp autotransporter | VF |
| LCF29_RS25530 (114196) | 114196..115409 | + | 1214 | WP_225343800.1 | IS3 family transposase IS629 | Transposase |
| LCF29_RS25535 (115678) | 115678..115965 | - | 288 | WP_000222766.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LCF29_RS25540 (115962) | 115962..116213 | - | 252 | WP_001132900.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| LCF29_RS25545 (117176) | 117176..118033 | - | 858 | WP_000774297.1 | incFII family plasmid replication initiator RepA | - |
| LCF29_RS25550 (118026) | 118026..118508 | - | 483 | WP_001273588.1 | hypothetical protein | - |
| LCF29_RS25555 (118501) | 118501..118548 | - | 48 | WP_229471593.1 | hypothetical protein | - |
| LCF29_RS25560 (118539) | 118539..118790 | + | 252 | WP_223195197.1 | replication protein RepA | - |
| LCF29_RS25565 (118807) | 118807..119064 | - | 258 | WP_000083845.1 | replication regulatory protein RepA | - |
| LCF29_RS25570 (119348) | 119348..119497 | - | 150 | WP_001312851.1 | Hok/Gef family protein | Toxin Detail |
| - (119541) | 119541..119602 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - (119541) | 119541..119602 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - (119541) | 119541..119602 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - (119541) | 119541..119602 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| LCF29_RS25575 (119858) | 119858..119932 | - | 75 | Protein_128 | endonuclease | - |
| LCF29_RS25580 (120178) | 120178..120390 | - | 213 | WP_001299730.1 | ANR family transcriptional regulator | - |
| LCF29_RS25585 (120526) | 120526..121086 | - | 561 | WP_000139315.1 | fertility inhibition protein FinO | - |
| LCF29_RS25590 (121189) | 121189..122049 | - | 861 | WP_000704513.1 | putative protein YcjY | VF |
| LCF29_RS25595 (122108) | 122108..122854 | - | 747 | WP_000205749.1 | conjugal transfer pilus acetylase TraX | - |
| LCF29_RS25600 (122874) | 122874..128144 | - | 5271 | WP_021513980.1 | Multifunctional conjugation protein TraI | Relaxase |
| LCF29_RS25605 (128226) | 128226..128453 | + | 228 | WP_000450520.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| LCF29_RS25610 (128453) | 128453..128851 | + | 399 | WP_000911333.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| LCF29_RS25615 (128860) | 128860..131013 | - | 2154 | WP_000009325.1 | type IV conjugative transfer system coupling protein TraD | - |
| LCF29_RS25620 (131266) | 131266..131997 | - | 732 | WP_000850422.1 | conjugal transfer complement resistance protein TraT | - |
| LCF29_RS25625 (132011) | 132011..132520 | - | 510 | WP_021513982.1 | conjugal transfer entry exclusion protein TraS | - |
| LCF29_RS25630 (132517) | 132517..135342 | - | 2826 | WP_001007037.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| LCF29_RS25635 (135339) | 135339..136712 | - | 1374 | WP_000944319.1 | conjugal transfer pilus assembly protein TraH | - |
| LCF29_RS25640 (136699) | 136699..137091 | - | 393 | Protein_141 | F-type conjugal transfer protein TrbF | - |
| LCF29_RS25645 (137078) | 137078..137419 | - | 342 | WP_001442101.1 | P-type conjugative transfer protein TrbJ | - |
| LCF29_RS25650 (137349) | 137349..137894 | - | 546 | WP_225343801.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| LCF29_RS25655 (137881) | 137881..138165 | - | 285 | WP_000624108.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| LCF29_RS25660 (138368) | 138368..139114 | - | 747 | WP_001016257.1 | IS21 family transposase ISEc12 | Transposase |
| LCF29_RS25665 (139129) | 139129..140670 | - | 1542 | WP_001298859.1 | IS21 family transposase ISEc12 | Transposase |
| LCF29_RS25670 (140916) | 140916..141191 | + | 276 | WP_001513501.1 | hypothetical protein | - |
| LCF29_RS25675 (141193) | 141193..141510 | - | 318 | WP_225343804.1 | conjugal transfer protein TrbA | - |
| LCF29_RS25685 (142332) | 142332..143075 | - | 744 | WP_001030367.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| LCF29_RS25690 (143068) | 143068..143325 | - | 258 | WP_000864318.1 | conjugal transfer protein TrbE | - |
| LCF29_RS25695 (143352) | 143352..145160 | - | 1809 | WP_000821847.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| LCF29_RS25700 (145157) | 145157..145795 | - | 639 | WP_000777688.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| LCF29_RS25705 (145804) | 145804..146796 | - | 993 | WP_000830187.1 | conjugal transfer pilus assembly protein TraU | - |
| LCF29_RS25710 (146793) | 146793..147425 | - | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| LCF29_RS25715 (147422) | 147422..147808 | - | 387 | WP_000097319.1 | type-F conjugative transfer system protein TrbI | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|