MGE detailed information
MGE type: Genomic_island MGE length: 9947 bp
Accession: NZ_CP068041 Location: 4080413..4090359 Organism: Escherichia coli strain XJW9B277 Replicon: chromosome
Accession: NZ_CP068041 Location: 4080413..4090359 Organism: Escherichia coli strain XJW9B277 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JJE78_RS19720 (4076246) | 4076246..4077577 | - | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| JJE78_RS19725 (4077599) | 4077599..4078588 | - | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| JJE78_RS19730 (4078687) | 4078687..4079625 | - | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| JJE78_RS19735 (4079939) | 4079939..4080157 | + | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| JJE78_RS26440 (4080413) | 4080413..4080951 | + | 539 | Protein_3907 | protein YhaB | - |
| JJE78_RS19750 (4080973) | 4080973..4082160 | + | 1188 | WP_024238569.1 | YhaC family protein | - |
| JJE78_RS19760 (4083183) | 4083183..4084328 | - | 1146 | WP_032298172.1 | glycerate 2-kinase | - |
| JJE78_RS19765 (4084425) | 4084425..4085315 | - | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| JJE78_RS19770 (4085345) | 4085345..4086115 | - | 771 | WP_048218026.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| JJE78_RS19775 (4086131) | 4086131..4087465 | - | 1335 | WP_001723935.1 | galactarate/glucarate/glycerate transporter GarP | - |
| JJE78_RS19780 (4087840) | 4087840..4089411 | + | 1572 | WP_001723936.1 | galactarate dehydratase | - |
| JJE78_RS19785 (4089560) | 4089560..4089895 | + | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| JJE78_RS19790 (4089895) | 4089895..4090359 | + | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| JJE78_RS19795 (4090414) | 4090414..4091223 | - | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| JJE78_RS19800 (4091472) | 4091472..4092752 | + | 1281 | WP_000681903.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| JJE78_RS19805 (4092775) | 4092775..4093248 | + | 474 | WP_001295547.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| JJE78_RS19810 (4093259) | 4093259..4094038 | + | 780 | WP_000406214.1 | PTS N-acetylgalactosamine transporter subunit IIC | - |
| JJE78_RS19815 (4094028) | 4094028..4094906 | + | 879 | WP_001300474.1 | PTS N-acetylgalactosamine transporter subunit IID | - |
| JJE78_RS19820 (4094924) | 4094924..4095358 | + | 435 | WP_000948824.1 | PTS galactosamine/N-acetylgalactosamine transporter subunit IIA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1047 | NC_000913 | 3267854..3277801 | 0.01 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22703 | NC_010473 | 3363621..3373568 | 0.01 | |
| Escherichia coli BW2952 | Genomic island | TA23871 | NC_012759 | 3153024..3162971 | 0.01 | |
| Escherichia coli DH1 | Genomic island | TA27421 | NC_017638 | 3245760..3255707 | 0.01 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29016 | NC_020518 | 2741187..2751134 | 0.01 | |
| Escherichia coli BW25113 | Genomic island | TA48700 | NZ_CP009273 | 3261213..3271160 | 0.01 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90495 | NZ_CP025520 | 2121277..2131224 | 0.01 |