MGE detailed information
MGE type: Genomic_island MGE length: 11674 bp
Accession: NZ_CP067311 Location: 3551944..3563617 Organism: Escherichia coli strain 027_SK3 Replicon: chromosome
Accession: NZ_CP067311 Location: 3551944..3563617 Organism: Escherichia coli strain 027_SK3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JJB21_RS17140 (3546945) | 3546945..3547379 | - | 435 | WP_097480507.1 | PTS galactosamine/N-acetylgalactosamine transporter subunit IIA | - |
| JJB21_RS17145 (3547397) | 3547397..3548275 | - | 879 | WP_001300474.1 | PTS N-acetylgalactosamine transporter subunit IID | - |
| JJB21_RS17150 (3548265) | 3548265..3549044 | - | 780 | WP_000406214.1 | PTS N-acetylgalactosamine transporter subunit IIC | - |
| JJB21_RS17155 (3549055) | 3549055..3549528 | - | 474 | WP_001723937.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| JJB21_RS17160 (3549551) | 3549551..3550831 | - | 1281 | WP_000681903.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| JJB21_RS17165 (3551080) | 3551080..3551889 | + | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| JJB21_RS17170 (3551944) | 3551944..3552408 | - | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| JJB21_RS17175 (3552408) | 3552408..3552743 | - | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| JJB21_RS17180 (3552892) | 3552892..3554463 | - | 1572 | WP_001723936.1 | galactarate dehydratase | - |
| JJB21_RS17185 (3554838) | 3554838..3556172 | + | 1335 | WP_001723935.1 | galactarate/glucarate/glycerate transporter GarP | - |
| JJB21_RS17190 (3556188) | 3556188..3556958 | + | 771 | WP_001723934.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| JJB21_RS17195 (3556988) | 3556988..3557878 | + | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| JJB21_RS17200 (3557975) | 3557975..3559120 | + | 1146 | WP_001424370.1 | glycerate 2-kinase | - |
| JJB21_RS17210 (3560143) | 3560143..3561330 | - | 1188 | WP_001723932.1 | YhaC family protein | - |
| JJB21_RS17215 (3561352) | 3561352..3561890 | - | 539 | Protein_3394 | protein YhaB | - |
| JJB21_RS25305 (3562146) | 3562146..3562364 | - | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| JJB21_RS17225 (3562679) | 3562679..3563617 | + | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| JJB21_RS17230 (3563716) | 3563716..3564705 | + | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| JJB21_RS17235 (3564727) | 3564727..3566058 | + | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| JJB21_RS17240 (3566084) | 3566084..3567292 | + | 1209 | WP_001295545.1 | propionate kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.008 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.008 |