MGE detailed information
MGE type: Genomic_island MGE length: 11674 bp
Accession: NZ_CP067265 Location: 3568427..3580100 Organism: Escherichia coli strain ABW_S38 Replicon: chromosome
Accession: NZ_CP067265 Location: 3568427..3580100 Organism: Escherichia coli strain ABW_S38 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JJB13_RS17250 (3563428) | 3563428..3563862 | - | 435 | WP_097480507.1 | PTS galactosamine/N-acetylgalactosamine transporter subunit IIA | - |
| JJB13_RS17255 (3563880) | 3563880..3564758 | - | 879 | WP_001300474.1 | PTS N-acetylgalactosamine transporter subunit IID | - |
| JJB13_RS17260 (3564748) | 3564748..3565527 | - | 780 | WP_000406214.1 | PTS N-acetylgalactosamine transporter subunit IIC | - |
| JJB13_RS17265 (3565538) | 3565538..3566011 | - | 474 | WP_001723937.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| JJB13_RS17270 (3566034) | 3566034..3567314 | - | 1281 | WP_000681903.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| JJB13_RS17275 (3567563) | 3567563..3568372 | + | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| JJB13_RS17280 (3568427) | 3568427..3568891 | - | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| JJB13_RS17285 (3568891) | 3568891..3569226 | - | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| JJB13_RS17290 (3569375) | 3569375..3570946 | - | 1572 | WP_001723936.1 | galactarate dehydratase | - |
| JJB13_RS17295 (3571321) | 3571321..3572655 | + | 1335 | WP_001723935.1 | galactarate/glucarate/glycerate transporter GarP | - |
| JJB13_RS17300 (3572671) | 3572671..3573441 | + | 771 | WP_001723934.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| JJB13_RS17305 (3573471) | 3573471..3574361 | + | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| JJB13_RS17310 (3574458) | 3574458..3575603 | + | 1146 | WP_001424370.1 | glycerate 2-kinase | - |
| JJB13_RS17320 (3576626) | 3576626..3577813 | - | 1188 | WP_001723932.1 | YhaC family protein | - |
| JJB13_RS17325 (3577835) | 3577835..3578373 | - | 539 | Protein_3416 | protein YhaB | - |
| JJB13_RS25425 (3578629) | 3578629..3578847 | - | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| JJB13_RS17335 (3579162) | 3579162..3580100 | + | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| JJB13_RS17340 (3580199) | 3580199..3581188 | + | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| JJB13_RS17345 (3581210) | 3581210..3582541 | + | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| JJB13_RS17350 (3582567) | 3582567..3583775 | + | 1209 | WP_001295545.1 | propionate kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.008 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.008 |