MGE detailed information
MGE type: Genomic_island MGE length: 11673 bp
Accession: NZ_CP060979 Location: 616952..628624 Organism: Escherichia coli strain EC3 Replicon: chromosome
Accession: NZ_CP060979 Location: 616952..628624 Organism: Escherichia coli strain EC3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H9191_RS02985 (611953) | 611953..612387 | - | 435 | WP_000948824.1 | PTS galactosamine/N-acetylgalactosamine transporter subunit IIA | - |
| H9191_RS02990 (612405) | 612405..613283 | - | 879 | WP_001300474.1 | PTS N-acetylgalactosamine transporter subunit IID | - |
| H9191_RS02995 (613273) | 613273..614052 | - | 780 | WP_000406214.1 | PTS N-acetylgalactosamine transporter subunit IIC | - |
| H9191_RS03000 (614063) | 614063..614536 | - | 474 | WP_001295547.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| H9191_RS03005 (614559) | 614559..615839 | - | 1281 | WP_000681903.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| H9191_RS03010 (616088) | 616088..616897 | + | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| H9191_RS03015 (616952) | 616952..617416 | - | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| H9191_RS03020 (617416) | 617416..617751 | - | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| H9191_RS03025 (617900) | 617900..619471 | - | 1572 | WP_001723936.1 | galactarate dehydratase | - |
| H9191_RS03030 (619846) | 619846..621180 | + | 1335 | WP_001723935.1 | galactarate/glucarate/glycerate transporter GarP | - |
| H9191_RS03035 (621196) | 621196..621966 | + | 771 | WP_001723934.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| H9191_RS03040 (621996) | 621996..622886 | + | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| H9191_RS03045 (622983) | 622983..624128 | + | 1146 | WP_001424370.1 | glycerate 2-kinase | - |
| H9191_RS03055 (625151) | 625151..626338 | - | 1188 | WP_049253626.1 | YhaC family protein | - |
| H9191_RS03060 (626360) | 626360..626898 | - | 539 | Protein_599 | protein YhaB | - |
| H9191_RS03065 (627154) | 627154..627372 | - | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| H9191_RS03070 (627686) | 627686..628624 | + | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| H9191_RS03075 (628723) | 628723..629712 | + | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| H9191_RS03080 (629734) | 629734..631065 | + | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| H9191_RS03085 (631091) | 631091..632299 | + | 1209 | WP_001295545.1 | propionate kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.008 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.008 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.008 |