MGE detailed information
MGE type: Genomic_island MGE length: 9947 bp
Accession: NZ_CP060928 Location: 2320491..2330437 Organism: Escherichia coli strain EC13 Replicon: chromosome
Accession: NZ_CP060928 Location: 2320491..2330437 Organism: Escherichia coli strain EC13 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H9200_RS11370 (2316324) | 2316324..2317655 | - | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| H9200_RS11375 (2317677) | 2317677..2318666 | - | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| H9200_RS11380 (2318765) | 2318765..2319703 | - | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| H9200_RS11385 (2320017) | 2320017..2320235 | + | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| H9200_RS11390 (2320491) | 2320491..2321029 | + | 539 | Protein_2239 | protein YhaB | - |
| H9200_RS11395 (2321051) | 2321051..2322238 | + | 1188 | WP_049253626.1 | YhaC family protein | - |
| H9200_RS11405 (2323261) | 2323261..2324406 | - | 1146 | WP_001424370.1 | glycerate 2-kinase | - |
| H9200_RS11410 (2324503) | 2324503..2325393 | - | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| H9200_RS11415 (2325423) | 2325423..2326193 | - | 771 | WP_001723934.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| H9200_RS11420 (2326209) | 2326209..2327543 | - | 1335 | WP_001723935.1 | galactarate/glucarate/glycerate transporter GarP | - |
| H9200_RS11425 (2327918) | 2327918..2329489 | + | 1572 | WP_001723936.1 | galactarate dehydratase | - |
| H9200_RS11430 (2329638) | 2329638..2329973 | + | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| H9200_RS11435 (2329973) | 2329973..2330437 | + | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| H9200_RS11440 (2330492) | 2330492..2331301 | - | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| H9200_RS11445 (2331550) | 2331550..2332830 | + | 1281 | WP_000681903.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| H9200_RS11450 (2332853) | 2332853..2333326 | + | 474 | WP_001295547.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| H9200_RS11455 (2333337) | 2333337..2334116 | + | 780 | WP_000406214.1 | PTS N-acetylgalactosamine transporter subunit IIC | - |
| H9200_RS11460 (2334106) | 2334106..2334984 | + | 879 | WP_001300474.1 | PTS N-acetylgalactosamine transporter subunit IID | - |
| H9200_RS11465 (2335002) | 2335002..2335436 | + | 435 | WP_000948824.1 | PTS galactosamine/N-acetylgalactosamine transporter subunit IIA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1047 | NC_000913 | 3267854..3277801 | 0.009 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22703 | NC_010473 | 3363621..3373568 | 0.009 | |
| Escherichia coli BW2952 | Genomic island | TA23871 | NC_012759 | 3153024..3162971 | 0.009 | |
| Escherichia coli DH1 | Genomic island | TA27421 | NC_017638 | 3245760..3255707 | 0.01 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29016 | NC_020518 | 2741187..2751134 | 0.009 | |
| Escherichia coli BW25113 | Genomic island | TA48700 | NZ_CP009273 | 3261213..3271160 | 0.009 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90495 | NZ_CP025520 | 2121277..2131224 | 0.01 |