MGE detailed information
MGE type: Genomic_island MGE length: 9947 bp
Accession: NZ_CP058302 Location: 1628263..1638209 Organism: Escherichia coli strain AH65 Replicon: chromosome
Accession: NZ_CP058302 Location: 1628263..1638209 Organism: Escherichia coli strain AH65 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUU85_RS07795 () | 1624096..1625427 | - | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| HUU85_RS07800 () | 1625449..1626438 | - | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| HUU85_RS07805 () | 1626537..1627475 | - | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| HUU85_RS07810 () | 1627663..1628007 | + | 345 | WP_000145840.1 | transcriptional activator TdcR | - |
| HUU85_RS07815 () | 1628263..1628505 | + | 243 | WP_123009844.1 | hypothetical protein | - |
| HUU85_RS07820 () | 1628515..1628801 | + | 287 | Protein_1526 | hypothetical protein | - |
| HUU85_RS07825 () | 1628823..1630010 | + | 1188 | WP_176256437.1 | YhaC family protein | - |
| HUU85_RS07835 () | 1631033..1632178 | - | 1146 | WP_001424370.1 | glycerate 2-kinase | - |
| HUU85_RS07840 () | 1632275..1633165 | - | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| HUU85_RS07845 () | 1633195..1633965 | - | 771 | WP_001723934.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| HUU85_RS07850 () | 1633981..1635315 | - | 1335 | WP_001723935.1 | galactarate/glucarate/glycerate transporter GarP | - |
| HUU85_RS07855 () | 1635690..1637261 | + | 1572 | WP_001723936.1 | galactarate dehydratase | - |
| HUU85_RS07860 () | 1637410..1637745 | + | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| HUU85_RS07865 () | 1637745..1638209 | + | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| HUU85_RS07870 () | 1638264..1639073 | - | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| HUU85_RS07875 () | 1639322..1640602 | + | 1281 | WP_000681903.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| HUU85_RS07880 () | 1640625..1641098 | + | 474 | WP_001295547.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| HUU85_RS07885 () | 1641109..1641888 | + | 780 | WP_000406214.1 | PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC | - |
| HUU85_RS07890 () | 1641878..1642756 | + | 879 | WP_001300474.1 | PTS system mannose/fructose/sorbose family transporter subunit IID | - |
| HUU85_RS07895 () | 1642774..1643208 | + | 435 | WP_000948824.1 | PTS sugar transporter subunit IIA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1047 | NC_000913 | 3267854..3277801 | 0.009 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22703 | NC_010473 | 3363621..3373568 | 0.009 | |
| Escherichia coli BW2952 | Genomic island | TA23871 | NC_012759 | 3153024..3162971 | 0.009 | |
| Escherichia coli DH1 | Genomic island | TA27421 | NC_017638 | 3245760..3255707 | 0.01 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29016 | NC_020518 | 2741187..2751134 | 0.009 | |
| Escherichia coli BW25113 | Genomic island | TA48700 | NZ_CP009273 | 3261213..3271160 | 0.009 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90495 | NZ_CP025520 | 2121277..2131224 | 0.01 |